Detailed information on ENST00000467842

lncRNA-RNA interactions

Number of interactions: 25

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000367590 xenotropic and polytropic retrovirus rec... protein coding ENST00000467842 503 251 UTR3 Trans
ENST00000380641 centlein, centrosomal protein protein coding ENST00000467842 600 307 UTR3 Trans
ENST00000424496 sense_intronic sense intronic ENST00000467842 605 285 noncoding Trans
ENST00000448214 antisense antisense ENST00000467842 572 296 noncoding Trans
ENST00000463496 aryl hydrocarbon receptor nonsense mediated decay ENST00000467842 538 294 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate red... processed transcript ENST00000467842 556 289 noncoding Trans
ENST00000620788 pleckstrin homology-like domain, family ... retained intron ENST00000467842 630 301 noncoding Trans
TCONS_00009095 xenotropic and polytropic retrovirus rec... novel protein coding ENST00000467842 503 251 UTR3 Trans
TCONS_00030165 antisense novel protein coding ENST00000467842 572 296 UTR5 Trans
TCONS_00107867 transient receptor potential cation chan... novel protein coding ENST00000467842 527 303 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000467842 587 301 UTR3 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (... novel protein coding ENST00000467842 634 307 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (... novel protein coding ENST00000467842 634 307 UTR3 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (... novel protein coding ENST00000467842 634 307 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (... novel protein coding ENST00000467842 634 307 UTR3 Trans
TCONS_00141681 Rho guanine nucleotide exchange factor (... novel protein coding ENST00000467842 634 307 UTR3 Trans
TCONS_00175015 copine IV novel protein coding ENST00000467842 558 306 UTR3 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding ENST00000467842 607 299 UTR3 Trans
TCONS_00196897 oncostatin M receptor novel protein coding ENST00000467842 557 291 UTR3 Trans
TCONS_00235393 processing of precursor 1, ribonuclease ... novel protein coding ENST00000467842 650 289 UTR5 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000467842 601 295 UTR5 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000467842 647 305 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000467842 647 305 UTR5 Trans
TCONS_00247297 family with sequence similarity 166, mem... novel protein coding ENST00000467842 631 304 UTR5 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000467842 640 312 UTR5 Trans

Sequence

>ENST00000467842 (4602 nt)
GACAACATGATTTTTAAGAGCCAAAGTAATTTTGATGTATTGTAAGTTTGGGAACTACTGGTCTAATACCCCTGACTTAATATCACATTCCTGATAAATA<br />TTACTAAATGTAAGTCACATCATGTCTGATTCATCATACTTATATTTTGCACCTTCTTACCTTCTTCTGTTATTAATTTGTTGCTTTTTCAACTTATATT<br />TTAGATTGAGGGTACATATGCAGGTTTGTTACATGGTATACTGCATGATGCTGAGGTTTGCGGTATGATTGAACCTGTCACCCAGGTAGTGAGCATAGCA<br />CACAACAGGTAGCTTTTCAACTCTTGCCCCCCTCTCTCCCTCCTCCAAAATCTGTCTTAAGTGCTATGGTATATACAAGAAGGAAGACACAAAACCACGT<br />GGGCTTTTTTTTTTTCTTTTTTTTCTTTTTGAGATGGAGTCTCACTTTGTTGCTAGGCTGGAGTGCAGTGATGTGATCTCAGCTCACTGCAAACTCCGCC<br />TCCCAGATTTAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGTGCACCACCACGACCAGCTAATTTTTGTATTTTTAGTAGAGAC<br />GGGGTTTCACCATGTTGGCCAGGATGGTCTCCATCTCTTGGCCTCATGATCCGCCCACCTCGGCCTCTCAAAAGTGCTGGGATTACAGGTGTGACCCACC<br />GCGCTCAGCCCACATGGGCTCTTTTATCACAATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGCATATTATAGGTGTGTGTAGGAAAAAGAAT<br />GTTAGAAATGTACCAATTTTGAAGGCGTAGACTATGAAATTACAAATGCTTCAAAATTTTCTTCCCAATACTTACGTGGCATTTTATAAATTTCCACCAA<br />TAAACGTGTATTATTTTTATTGAAAAAGCATATTTTTAACATGCCCTTCTAGATGCCCTCCTAGCCAGACTGAATCACCTCCCATTTGATTTTTCTTAAT<br />TTTCTACCTTTAGGTTCTGGCTCATTCATTAACATCAATTTCCATTCATAAGTCCTCACAAACCCACTTTTCCTCTTGCCTGAGTGCCTCACATACCCTA<br />CTGCCTGAGATGGTTCCAGAGGCGGTCTCCTCTCTCCCTTAGAAACACCAGGCACACACCTGCCCCCAGTCTCGCCTGCACTCTCCTTTCCTCCCGCAGA<br />GAGGCATTCCTTTCTCCTCCTCTCATCCTACACACACTATAAGAGACAACTGAAATCTTGCCTCCTCCAGCCAGCTTCTTAATTCATTTGTTCTCAAAGC<br />CCTGGTTTGAGCTCACACAGCATCTAGAGTGTTTTACAAAATATAAAATATTATTATCCCTGCCCTGAATTTTTTGTTTTGGTATGTGTGTTATTTTCCC<br />CTCCAATAAGATTGTGCCTTGGAGAGGGCTGAGAACATAGTATCATAGATAAATGAATAAAATAACATAAAATAAAATAAAAATACATATACCCTTTGAA<br />CTAACTATTCCACTTCTATGTAAGCACAATTATATGCCAGTAACACTCATTTTAACGCTACTTTAGTGGCAAAAAATTGTAAACACCTCAGATGCCTATT<br />AAAAGAGGAATGGTTTAAAGATACTATTATAGCCACACTATGAAATATAATACAGTAGTTAAGAAGAACGAGCTTGATTTGTATGTACTGACAAGAAGAA<br />TCTATAAGGTATGTAAACAGTTGAAAAAAAAGCTACAGAGTTTTACATTTGTCAAGATCTAACACTAAACAAAATTAGAAACATGTGAAATCCATATACA<br />CACGTAGAAAAATACATATAATGAGCCGTGGATGGAAACTCGCAAATGTGATATTAAAGACTAGCACTATAAGACTGAGTGAGATTTGGAGAGTATAGGA<br />AAGGAGGCTTTTAGTTAATATAGAGAGATATTCAAAAATTTATGAGTGTGATCTCATGTATTAGTTATTCGGTTAAAGAAACAAAATTAAATGAAAAATA<br />CATTTTTAAAAAGGTTGCAATTCTGAATTATGGGAGAGAAATAAAAATTAGCAAAACATATTTGCAAAGTGGCTCAGGAGGAAGGAGCTGAAACCCTAAG<br />AATGGGTGAGTTTTTTTTTTTTTTCAGAGACAATACAGAAAAGAAGAGGCAAAGGGGCCGAGATGGGATACAGACCTGTATCACACAGGTGTGTGCACAT<br />TCTCATTTAGAACTGGAACAAGGGAGTCAGATTTAAAATTCTGGTGCAGATTCCAAAGGTGTTCTCTGAGGAAAAGTTCTTTTGTTTGGAGATGCCATGT<br />GTTACAGCACAGAAATTGATCAACCTGGCTTAGAGCGTCACATTCTTCCTCTGTTGGAGCAAGAGGTACAGAAGGAATTGGAATTTAGTGGAATTGAAGA<br />TCTTTTTGAACAGCATCTGCAGAATGTAGTTCATTCTCACCTGGCTGGGTAGGGAAGGTTGGAAGGGGATGGTCAATAATCATTCCTGGTCACTGTGAGT<br />CTGGCATCACCTTGTAGACCACATGGGTGTCTCTTCCTGTCCACATCACTGTAACCCCAGTGTGGGCACTTCTGCTGGCGAGAAGGCCCAGGTTCTCTAC<br />ACACCACTGAGTCAGTTCCATCTCCCCAGCGGGGCACCTTGACCAAAGCCATCAGCTGAACCACCTTCTTCCTGTCCCTAGGAAAAAACCCTGATCCATG<br />GGCTAAGAATCTGAATGAAAAAGACTATGAGTTGCTGTGCCTTGATGGTACCAGGAAACCTGTGGAGGAGTATGCGAACTGCCACCTGGCCAGAGCCCCG<br />AATCACGCTGTGGTCACACGGAAAGATAAGGAAGCTTGCGTCCACAAGATATTACGTCAACAGCAGCACCTATTTGGAAGCAACGTAACTGACTGCTCGG<br />GCAACTTTTGTTTGTTCCGGTCGGAAACCAAGGACCTTCTGTTCAGAGATGACACAGTATGTTTGGCCAAACTTCATGACAGAAACACATATGAAAAATA<br />CTTAGGAGAAGAATATGTCAAGGCTGTTGGTAACCTGAGAAAATGCTCCACCTCATGTGAGTAGGAGGAACAGCATGGGGAAGTGGCAACCAAACATGGT<br />GGTGAGTGCTGGGATGGTGGGTGGGTACAGGAGGGGTAGGCTGTGGCCCTTGGGATAGGACAACATGGACAAAATGAAATGGTGAGTGAACAATCTAAGC<br />CCGGCATGTATGACAGGCTAGACTGTAGGGGCAGATAGTAAGGGGATACAGGCTCAGAGCACTAAGGTAGTGAACTTATTGGGTATAGAGAATTCCATCT<br />TATTTCTAAGAAAAGGACTGGGTTTATGTGTACATGCCATTGCTCTGCAGTAAACTTTTGATTAGAGTTGCCTTGTCCAATATGGTAGCCACCAGCAAGA<br />TGTGACTATTTAAATTTAAGTTAATTAAAATTAAACTAAATAAAAGATGTATTTCTTCAATCCCACCTAGCTGCATTTCAAGTGCTCAACAGCCACATGT<br />GGCTCCATATTGGTCAGCAAAGAGAATGTTTGCATCATCACAGAAAGCTCTTTCAGACAGTGCTGCTCTAGACAGCTTCAACAATGATAGGTTCTGGTAA<br />CCATAAAGTTGCTATGCATACTACTCATTTGGAACACCAGTTTCTGAGAACTGAAATAGAATAAAACACATCTTTGCAGTATAACTATGTTGGGTGTAAC<br />TGAGTCACCTGAAAAAGTTTGGAAGCTGGGGAATAACATGTGGTGTAGGGCAGTTAGTCTTTCCACAGGAGTATGCAGATAAGGGAGTCTTGATCCTTAT<br />TAAAATGCTGATTCTCAGAGCCTTGAGATACTGATTTAGAAAGTCTGTGCTAGGTCAGGTATCCGCATTTGAAAAGCTGCCCCCATGTAATTCTGACGGA<br />AGCAGCAATGTGCTTGTCTAGGTTCGCTATTGTGAGAATCAAGTTGATATTTACCTAACCTATATCCTCCACAAAAGCAGACAGTCTGGCTCTGCTCTTC<br />TTTCCTCCATCCTTAGCCCACAGCACAGAAACTGGCACATTGCAGGTGCTTTTTGCTATGTCAGTTCCTCACCTGCTTAAAGAGGTCAGGGAGGACAGTC<br />TTCCTGGGCGACTCCTGGCCTCAGGAACTCAGATGTGTGAGCCTCGCCCATAAGAAACAAGGTGGAGGACCCTGTAGGGCAGGAAAATCATGTTAACAGC<br />TTTGGCGTGGGGCACTCCCCAGGATAGGCACAGGAGCTGTGCAGGCAAGTAGAAAAGAGCACTGGGAGAACGGCCCAGTTCACAGAAGAGGAGGCAGCAA<br />GTCTGCACACTTTGTACTATGCTGAAATTGTTCAATCACTCGACAGTTCAGAAATAAATATAGGAAGATTTTGAAAATCCTACCTCTCTGCTCTGCTCCA<br />CAGCACTCCTGGAAGCCTGCACTTTCCGTAGACCTTAAAATCTCAGAGGTAGGGCTGCCACCAAGGTGAAGATGGGAACGCAGATGATCCATGAGTTTGC<br />CCTGGTTTCACTGGCCCAAGTGGTTTGTGCTAACCACGTCTGTCTTCACAGCTCTGTGTTGCCATGTGTGCTGAACAAAAAATAAAAATTATTATTGATT<br />TT

Expression



Full and truncated open reading frames discovered in ENST00000467842

In silico ORF/peptide predictions
>peptide 1 (72 aa)
MLARMVSISWPHDPPTSASQKCWDYRCDPPRSAHMGSFITICVCVCVCVCVYVHIIGVCRKKNVRNVPILKA

>peptide 2 (71 aa)
MESHFVARLECSDVISAHCKLRLPDLSDSPASASQVAGTTGVHHHDQLIFVFLVETGFHHVGQDGLHLLAS

>peptide 3 (57 aa)
MKKTMSCCALMVPGNLWRSMRTATWPEPRITLWSHGKIRKLASTRYYVNSSTYLEAT

>peptide 4 (51 aa)
MCYSTEIDQPGLERHILPLLEQEVQKELEFSGIEDLFEQHLQNVVHSHLAG


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT092203 (Evalue: 5.0E-99)

Best hit to Swiss-Prot:
sp|P02787|TRFE_HUMAN (Evalue: 3.0E-74)