Detailed information on ENST00000468266

lncRNA-RNA interactions

Number of interactions: 13

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000441159 family with sequence similarity 115, mem... protein coding ENST00000468266 529 162 CDS Trans
ENST00000441159 family with sequence similarity 115, mem... protein coding ENST00000468266 706 239 CDS Trans
ENST00000518791 family with sequence similarity 115, mem... protein coding ENST00000468266 706 239 CDS Trans
ENST00000518791 family with sequence similarity 115, mem... protein coding ENST00000468266 529 162 CDS Trans
TCONS_00225245 family with sequence similarity 115, mem... novel protein coding ENST00000468266 706 239 CDS Trans
TCONS_00225245 family with sequence similarity 115, mem... novel protein coding ENST00000468266 529 162 UTR3 Trans
TCONS_00225248 family with sequence similarity 115, mem... novel protein coding ENST00000468266 706 239 CDS Trans
TCONS_00225248 family with sequence similarity 115, mem... novel protein coding ENST00000468266 529 162 UTR3 Trans
TCONS_00225256 family with sequence similarity 115, mem... novel protein coding ENST00000468266 714 239 CDS Cis
TCONS_00225256 family with sequence similarity 115, mem... novel protein coding ENST00000468266 529 162 CDS Cis
TCONS_00225257 family with sequence similarity 115, mem... novel protein coding ENST00000468266 714 239 CDS Cis
TCONS_00225257 family with sequence similarity 115, mem... novel protein coding ENST00000468266 529 162 UTR3 Cis
TCONS_00225261 family with sequence similarity 115, mem... novel protein coding ENST00000468266 529 162 UTR3 Cis

Sequence

>ENST00000468266 (463 nt)
CGACACGTCCCCCGGGCGCCACTGCAGAGCCTGTCCGTCAGTCCCTAGGTATCCGCACTGCTCAGGGGAGGATTCCCTGGGAGCACCCACCAGCTGAGAT<br />CTGCACATCAGCCACAATCCTCTCAGGACGGCGGAAAGGGAAGGGCTCAGCCGCCAGCCTGGCCACAGCCTGCATCATCTCATCCCAGAGGCGGAGCACA<br />GGCTCGGGGTCCTTCAGGGCCTGAAGGAGGTAGAGCCCGGTACTCACCCAGCAATCATTGTTGCCTGACAAAAGTCACAGAGAAGGCTCAGTTCTTCCTT<br />CCTATGTGAGTATATCTCCACTTGGGGCCTCCCAGCCCCTCCCAGTGGTACAGCTTCTCCCCTGTGTATCTCAAGTCATCCATACTTCTTAGACTCATCC<br />CCTCTAAACCTTAAGCAGTGTCCCAATCCCCATCTTCTTGAAAGTACCTGATGAAGAATGGAG

Expression



Full and truncated open reading frames discovered in ENST00000468266

In silico ORF/peptide predictions
>peptide 1 (73 aa)
TRPPGATAEPVRQSLGIRTAQGRIPWEHPPAEICTSATILSGRRKGKGSAASLATACIISSQRRSTGSGSFRA


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT123885 (Evalue: 0)

Best hit to Swiss-Prot:
sp|A6NFQ2|TCAF2_HUMAN (Evalue: 2.0E-21)