Detailed information on ENST00000469150

lncRNA-RNA interactions

Number of interactions: 66

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000257287 centrosomal protein 135kDa protein coding ENST00000469150 621 317 UTR3 Trans
ENST00000378004 Rho GTPase activating protein 26 protein coding ENST00000469150 548 304 UTR3 Trans
ENST00000448214 antisense antisense ENST00000469150 511 289 noncoding Trans
ENST00000478730 ORAI calcium release-activated calcium modulator 2 protein coding ENST00000469150 628 292 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000469150 608 290 noncoding Trans
ENST00000506202 centrosomal protein 135kDa retained intron ENST00000469150 621 317 noncoding Trans
ENST00000512404 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000469150 572 277 noncoding Trans
ENST00000620139 melanoregulin protein coding ENST00000469150 603 309 UTR3 Trans
TCONS_00001821 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000469150 645 279 UTR5 Trans
TCONS_00001821 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000469150 604 271 UTR3 Trans
TCONS_00001823 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000469150 645 279 UTR5 Trans
TCONS_00001823 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000469150 604 271 UTR3 Trans
TCONS_00010077 Ras association (RalGDS/AF-6) domain family member 5 novel protein coding ENST00000469150 662 447 UTR3 Trans
TCONS_00011236 solute carrier family 35, member F3 novel protein coding ENST00000469150 641 294 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000469150 600 279 UTR3 Trans
TCONS_00030165 antisense novel protein coding ENST00000469150 511 289 UTR5 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000469150 633 294 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000469150 639 297 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000469150 780 472 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000469150 639 297 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000469150 744 481 UTR3 Trans
TCONS_00053851 transmembrane protein 263 novel protein coding ENST00000469150 622 293 UTR5 Trans
TCONS_00061864 transmembrane protein 116 novel protein coding ENST00000469150 610 283 UTR3 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000469150 611 271 UTR3 Trans
TCONS_00090939 nucleoporin 93kDa novel protein coding ENST00000469150 603 476 UTR5 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000469150 622 366 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding ENST00000469150 633 283 UTR5 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding ENST00000469150 603 319 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000469150 633 283 UTR3 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000469150 603 319 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000469150 633 283 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000469150 603 319 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000469150 633 283 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000469150 603 319 UTR3 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000469150 677 652 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000469150 677 652 UTR5 Trans
TCONS_00103554 tubulin, gamma 2 novel protein coding ENST00000469150 684 428 UTR5 Trans
TCONS_00105791 arylsulfatase G novel protein coding ENST00000469150 604 294 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000469150 607 293 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000469150 649 472 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000469150 607 293 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000469150 649 472 UTR3 Trans
TCONS_00109814 lincRNA novel protein coding ENST00000469150 553 279 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000469150 638 299 UTR3 Trans
TCONS_00118582 centrosomal protein 76kDa novel protein coding ENST00000469150 622 445 UTR3 Trans
TCONS_00132233 zinc finger protein 43 novel protein coding ENST00000469150 630 278 UTR5 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000469150 619 284 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000469150 619 284 UTR3 Trans
TCONS_00142157 LY6/PLAUR domain containing 6B novel noncoding ENST00000469150 623 274 noncoding Trans
TCONS_00142168 LY6/PLAUR domain containing 6B novel protein coding ENST00000469150 623 274 UTR3 Trans
TCONS_00142174 LY6/PLAUR domain containing 6B novel protein coding ENST00000469150 623 274 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000469150 608 284 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000469150 632 273 UTR5 Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding ENST00000469150 735 458 noncoding Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding ENST00000469150 620 298 noncoding Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000469150 607 298 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000469150 604 293 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000469150 652 288 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000469150 652 288 UTR5 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding ENST00000469150 571 276 UTR3 Trans
TCONS_00198039 hexosaminidase B (beta polypeptide) novel protein coding ENST00000469150 620 301 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000469150 637 303 UTR5 Trans
TCONS_00216910 high mobility group nucleosomal binding domain 3 novel noncoding ENST00000469150 658 283 noncoding Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000469150 661 264 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000469150 618 497 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000469150 618 497 UTR5 Trans

Sequence

>TCONS_00243482 (3388 nt)
TGTGTAAGGAGTTGGGGCAGCGGGTGTATAGAGGCAGCAGGAAAGGGTACAATGAGGAAACTTTAAAATAAGGTATATTATACCTTGAATACCAGGATAT
GGAGTTTGGACTTTATCATGAATGCAGCAGAGAGACCTCCAAGGGTTTTGAAGAGGGTAGTGTCATCACCAAGAGCAGGATGAAGAGGGACTGGATGGAG
ACTGAAGTGAAGGAGAGCAGTTAGGCTGTTGTAATAGACCAGATGAAAGGTGATGTGGACTACATTCGTGTAAAAGCATAGGGAATTAACACTTTCATTC
AGCCCGTACATCGAGGACCTACTATGTACAAATAATTATACTAGATTCTTGGATGTCAAGATTCAGTTATTCTGTAAGTAAAGATAAAAAGAGACCCTGG
AGCGGAAGTTTTGGTATACTCCAAGATCTTAGACTTGTTCTTTTTCTTTGAGATGGGGTCTCACTCTGTCACCCAGGCTGCAGTGCAGTGGCATGATATC
AGCTCACTGCCACCTCTGTCTTCTGGGCTCAAGCAATTCTCCCATCTCAGCCTCTCGAGTAGCTGGGACCACAGGCGTGCCCCACAACACCCAGCTAATT
TTTTTTTGTATTTTTGGTAGAGATGGGGTTTTGCCATGTTGCCCAGGCTAGTCTCAAACTCCTGGACTTAAGCAATGCCCCCTACCTCTGACCTCCAAAG
ATTACAGGAATTACAGGTGTGAGTTTGACTTGTTCTTGATTGGACAGAGATGCCATTGACAGGATAAAAATAACCACCAACATTTAGCGAGCTTATTATG
GCTGGGCATTGTTTTAAACAGATTATAAGCATGATCTTCACAACAATGTCATGAGTTAATTACTGTTATCTCCATTTTATTTTATTTTATTTTATTTTAT
TTGTGAGACAGAGTCTTGCTCTGTCGCCCAGGCTGAAGTGCAGTGGCGCCATCTCGGCTCACTGCAGTCTCTACCTCCTGAGTTCAAGTGATTCTTGTGC
CTCAGCCTCCCAAGTAGCTGGGATTACAGGCGTGCATCATTACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGTCAGGCT
GGTCTCAAACTCCTGACCTCAAGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGTATTACAGGTGTGAACCATTGCATCCCACCTATTTTTTATTTTT
TGAGGCAGGGTCTTGCTCTGTCATCCAGGCTGGAGTGCAGTGGTCTAAGCACAGCTCACTTCAGCCTCAACCTCCTGGGCTCCAGCCATCCTCCCACCTT
AGCCTCCCAAGTAGCTGTGACCACAGGTGCACACCATCACACTCTGCTAATTTTTGTTTTGTTTTGAGATAGGGTTCTCACTGTGTCACCTGGGCTCAAG
TACAGTGGTGTGATCATAGCTCACTGTAGCCTCGAACTCCTGGGCTTAAGCGATCCTCTTAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAACCACTGT
GCCCAGCCTCCATTTTTTTCCAGTTGAAGAAACTAAGGCTTAAAGAGGCTTAAATAATTTGTCCAAGGATTCACATTTAACTAAGTAGTTAGGATTGCAC
TCAGATTTGTCCTACTCTAGAGGCCAAACCCTTTAGACACTATACTATAACAGCTCTTAGAACTAGAGAAGTTGGCAAGAGCAGGTTTTGTTTTTAAGAT
ATATTGACTTTAGAGACACGAATTGTTTCTATTCTTCATAGGAAAGTACTAGTTCAGAATATAGCAGTAGCCCAAAGGATGGTAGTGGTTAATCTGGAAA
AATGGAAAAGGAATTCAGGAAAGACTTAATAAAGGGCATGTGATACTTGAAAGATGAGTAGTTGATATACTGAAAGTGGCAACGACATTCCTATTAGAAC
AGCATGACAAAGGACATTCCTATTGGAAAGAACAGCATGACAAAGGTACAGGGGCAGAAAGCGGCATAATATGTTAGGTAAATGAAAAAGTAGTTAAGTG
TGGCTGAAATGTAGGAGGCAAAGCAGGGAGCTGATACTAGCAGGGCAGATTATGAAAGACCTTTTATCACACATATTCAGTAGGTCCTTTTCAATGCCAA
ATGGTTCATTTTGCTTGGGCAGAAGTGAACTGACCAGCTCCTAAATAAGCATGTCAAGCTCATTTAGCATGTCAGCTTGTTTTGTGGGATGATCTCACCC
TTGCCCCTGAAATTCCAGCTTCCAACTGAGTGGCTGAAGATAAGTGGACTAGAGTTTGGAACAGATCTAGATTAGCTTCTAGAGGTTCCATTTGTCAAAT
GAGAAGTCTACCCTTCCATTTTCCTTTCCAGTAGAATAAATAATGCTTGGAAACCTCTTGGGTGGGAGGGGGAGGGGAGGAAAAGTAAACTTTTGTTTTG
ATTTTTGTAGCCCTCCCAGGCCCAATACTTCAAAGCATCCTACCTCTGCTCAATATATATTACTTGGAGAGGATTGAGGAAACTGCCCTCAAGAAAGGCC
TCTCAACTCAGGCCATCTGGCGCCGACTCTGGGATGAACTGATGAAGACAAGGCCTTCCAGTTTGGAAGTAAGTTAAGGTATCAGGTAGAATGCTAGCCT
GATTTTGCATGGTAAAAGCAGGAATAGCACACAAACACAAGCTGGGTACTGATAAAGTGCAGAGGCAATGATGGAATGGATTTGGGAGGAGGGCTCTGAT
GGCTTGTCACAAGGTTTTGGTCCATTTGGCATTTGTCACTGAATTGCTTGCTCACTGTATTTGCAGGGGACACAAAACAGGGAAAGTTAGTGATCACAAT
GGATGGCAGAGCCAGGATTCCTAGAGTTCTTGATGGTGTTGGTGCAGTGGTCAAATCTAACAAAATGAAATTTAATAGAATACACCAATACTTCAATGAG
TTTTAAAAGTTCCAATTGCATGGTATCGGGATGAGGGATAAAGGAGTATGATTAGTAACAGCTTGTATAAAAAAGATTAAGGGAGTTTAGTCAACAATGT
GTTGAAGCCACTTATAACGACTATACCTTGAGCTGTGTGAACTAATGTAAATATAGTATAGGCTGAAGGACAAGGTGGACAACAGTCCTGCCTAGCTCTG
CAATGGTCAGGCTACCCGTGGAGATTGGAGAAAGTCAAAGCCACATTATGTGAGTCACATTGGGACAACTGGAGATGTTTTTCCTGAAAAAGAGAAGACT
TGGGAAACATGACCCATCTTGAAATATATGAATGGCTGTCACATGAAGGAGGGATTAATAGACTTGTTCTGGATGGAAGCTAATGGAAGATACATTTTTG
CTAACCTGAAGTTTACGTAAAGCTTAAACCCTGAGCTTATGAAACAAGCTAATTCTAGAGGTAATAAACTTCCCATCACTAAGTTCAAA

Expression



Full and truncated open reading frames discovered in TCONS_00243482

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.