Detailed information on ENST00000470252

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00116668 desmoglein 3 novel protein coding ENST00000470252 551 292 UTR3 Trans

Sequence

>TCONS_00116668 (2540 nt)
CTGATGCAGAAACCAATAAACAAGGAGGCACCCAATAAATACATTCTTAGAAAGTGTAATATGTGCTTTGTAGGAAAGCAATGGGGGTAGTGTAATTGAG
ATTCATGGGGGAGAGCTGTTTAGATAGGATGATCAGAGAAGGGGTCTTTAATGCCGCAAAGGATGAGGAGAGAGCCAAATAACGCAGAGAAGAGTGTTTG
GGGTACAGAAAACAGTCAGTGCAAGGGCACTGCAGTAGGAGGGGCTTGCACATTTGAGGAACAGGTTGGTGGTCCCTGTGGCCAGAGCAAATTGAGAAGA
GTGCCGAGGAAGAGATGTGCTTGGAAAGGGTCAGATTCATGCCACTGGGATGGGAAGAGGTAAGTGGAGGTTCACAGGAGGTTTCCTGAAGAAATCAGCT
CCTGGAGGAAGTGAGGGAAGAAAAAAAAGGGCCAGGGAGTGCCATGGCAACCAATTCTGAGAGGTGAGAGGTCATGGGATGCCGGGGAGGGTGATCAGCA
GACAGGCCTGGCTGGAGTGGAAGGGCGTGATCTGGAGGTCCCAGCCCTGTCATTGCCTTGGGAGAAAGAAAACGGCCACAGGTCTAAGGGCTCCAAGGCA
AGGCTGATGGGATAGAGCTATGGTGGGTGAAATGGGGTGACAGTGAGGCAGGGGACACAAGCCGTTCCATTGTCTTTCTGTCTCTCCACAGCGCCGCCCC
TGGCTGGGGGCACCCCTGCAGGTGGGACTGGTGGGCTTCTGCCTGGTATTTGCAACCCCCCTGTGCTGTGCCCTATTCCCCCAGAAGAGCTCCATACACA
TAAGCAACCTGGAACCAGAGCTGAGAGCTCAGATCCATGAGCAAAACCCCAGCGTTGAAGTGGTCTACTACAACAAGGGGCTTTGAGGAGGGTCAGCCTC
TGTCCCCTCCCTCACTTCCTTGGGCTGCTGCTTTAGTGGAGTCATGTCACCCCTACCACTTGGCTATCTGCCTAGCACTGGGCAGGGGCCTTGGTGGGCA
GATGGCAATTGAGGGTAGCAACCTATTAGGGTGGGGGAGGGACCTCCATAAGGCTTTTCCTCCCTTCTCTGGTTTCAAAGATCAGAGCACATAACCCCTC
CTGTGCTTGAGTGTCCATGCATATACATACATGATACACATGTGTATGTGTACATTGGGTCCTGAAAGCTAGAAGCAGGCATGCTAGCCTAGTATGTTCT
GACATCTGGCTTCCCTTCTCAGCCTCATGTCCACCTGCCTGCCAGCCAGGCTACAGGTGTGACTTCCTTCTCTAAACTGTTACACCAGCCAAGTTATTTT
TGATGGCACCTCATCCCTTCTAGAAATAGGAGGAGCCCCAGGATCTCAGGACAGAGACTTATAGACACTAGTAGGACAAAGCGGGCTGAATCCTTCAGGT
TTCTGATACCTAGCTCCCCAAGCTGACTGGGCTGGCAGAGGAGAACATGTTGAGACAAGGGAGGCAGGGGACTTATGCATCCCTCAGTGCCATCCCTTGT
ATCCTGGAATAGCTCCATTTCCCCTCCTCCTCTCTACCAGACAAAGGAGTGCCTGTGTCCTGTACTGCCCTCGCTGTCTCCCCCACCACCCTACTTGACA
GCGTGGGCATCTTCAGGCACAGCCTTGGGAGTTCCTGGTGTGCTCTGACATCATGACCTCAAATCTAAATCCTCCAATCCCAACTCCCTTTCCCAAACAA
AAAGCCACAGAGGCAGAGCAAGCATTCCCCTTTAAGAGCTTCCACTGCACCCCCTCCCAAGGGACACAGCGGTAGGAATGGTGCTTAAACTCCACAGGTA
TCAGAGAGGGTGTAACTAGGACATCCTCAAGGGCAGCTAGGCCCCGAATGTACAATGTTAAGACAGGGAATTTTGTGTTCCATTGACTTTTTTTTTTTTT
TTTAATGGAGTTTCACTATTTTGCCCAGGCTGGAGTGCGATGGTGCGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTCTTGCCTC
AGTCTCCCGAGTAGTGGAAATTACAGGTGTGTGCTACCACATCTTGCTAGTTTTGTATTTTTAGCAGAGATGGGGGTTTCACCATGTTGGCCAGGCTAGT
CTCGAACTCCTGACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGCACTGGGATTACAAGCATGAGCCACTGTGCCCAGCCTGTTCCACTGACATTTC
TTAGACATTCAGCAAAACCCCCACCTTAACCTCTTTTCTTTCTTGAGGGTTGGTCCTGTCCCCACCTCCACCCTCCCACCCCCTGGAAGAGGAAGGGCCC
GGGCATCAGTGGCTAGTCCAAATAAAATATGGGCTTGGGGATGGAATGGGTGGTGGTAAGTTCACAGAGTGTAGTTAGATCCCAACTCCCATGACCTCTG
GCTTCAGTGGTGGGTGGGGCAGGGCAGATGAAAGGGCTTCAGTGGGAACCTCTGAGAGCATTTTCCTGTTCCCCCTATCAACCGCCCCCAGTGATAACAT
CTGTGAAGCCAGCCATTACTCAATAAACTGCAAACTTGTCT

Expression



Full and truncated open reading frames discovered in TCONS_00116668

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.