Detailed information on ENST00000470475

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000345714 serum/glucocorticoid regulated kinase family, member 3 protein coding ENST00000470475 603 267 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000470475 603 260 UTR5 Trans
TCONS_00203988 family with sequence similarity 169, member A novel noncoding ENST00000470475 603 260 noncoding Trans

Sequence

>TCONS_00203988 (980 nt)
TTCCAGCCAGCGCCGAGCGATGGGCATCTCTCGGGACAACTGGCACAAGCGCCGCAAAACCGGGGGCAAGAGAAAGCCCTACCACAAGAAGCGGAAGTAT
GAGTTGGGGCGCCCAGCTGCCAACACCAAGATTGGCCCCCGCCGCATCCACACAGTCCGTGTGCGGGGAGGTAACAAGAAATACCGTGCCCTGAGGTTGG
ACGTGGGGAATTTCTCCTGGGGCTCAGAGTGTGAGTGAGGCCCTTTGGGAGTGGGTGGGAAAACGCACCTAAACGGTCTTAAGATTCACCAAGTGGGCCT
GGCGCGGTGGCTCACGCCTATAAGCCCAGCACGTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGTCCAGCCTGGGCAACAGAGCGA
GACTCTCAGTAAAAAAAAAGATTCAAGTGCTTTTAGCAAGTAGTCTGTGGCTTAGACCAAGGCATTTGAAGTTTCTCCTTGCTGAAAGATCTTAAGGTAG
CTGGGGAGTTCTCTCCACCCAGGCTGTCCTGCTCCAATCTCTTTTTTTGAGATTGGGTCTCTGTTGCTCAGGCTGGAGTGCCAGTGGCGTGATCTTGGTT
CACTGCAGCCTCCGCCTCCTGGGTTGAAGTGATTCTCCTGCCTCAGCCTCCCAAGAAGCTGGGATTACAGGCGTGTGCCATCACACCCGGCTGCTTCTGT
ATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAATTCTTGGCTTTAAGTGATCCACCCGCCTTGACCTCCCAAAGTGCTGGGGTT
ACGGGCGTGAGTCACCGTGCCCGACCTGCTCTGATCTTTCTGAACTCTGCAGCCTGAGAGATTGGGGCTGGTAAAGACTGCGGGTTGCCAAACATAACTA
GAAACGTGGGTTAGGGGGTTGTGGAAGACGAACTGATGCCCCATGGCTTGTAAAGGCTGAGAGTTCCCTTATTTCTCCTTA

Expression



Full and truncated open reading frames discovered in TCONS_00203988

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.