Detailed information on ENST00000470475

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000345714 serum/glucocorticoid regulated kinase fa... protein coding ENST00000470475 603 267 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, mem... novel protein coding ENST00000470475 603 260 UTR5 Trans
TCONS_00203988 family with sequence similarity 169, mem... novel noncoding ENST00000470475 603 260 noncoding Trans

Sequence

>ENST00000470475 (981 nt)
TTCCAGCCAGCGCCGAGCGATGGGCATCTCTCGGGACAACTGGCACAAGCGCCGCAAAACCGGGGGCAAGAGAAAGCCCTACCACAAGAAGCGGAAGTAT<br />GAGTTGGGGCGCCCAGCTGCCAACACCAAGATTGGCCCCCGCCGCATCCACACAGTCCGTGTGCGGGGAGGTAACAAGAAATACCGTGCCCTGAGGTTGG<br />ACGTGGGGAATTTCTCCTGGGGCTCAGAGTGTGAGTGAGGCCCTTTGGGAGTGGGTGGGAAAACGCACCTAAACGGTCTTAAGATTCACCAAGTGGGCCT<br />GGCGCGGTGGCTCACGCCTATAAGCCCAGCACGTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGTCCAGCCTGGGCAACAGAGCGA<br />GACTCTCAGTAAAAAAAAAGATTCAAGTGCTTTTAGCAAGTAGTCTGTGGCTTAGACCAAGGCATTTGAAGTTTCTCCTTGCTGAAAGATCTTAAGGTAG<br />CTGGGGAGTTCTCTCCACCCAGGCTGTCCTGCTCCAATCTCTTTTTTTGAGATTGGGTCTCTGTTGCTCAGGCTGGAGTGCCAGTGGCGTGATCTTGGTT<br />CACTGCAGCCTCCGCCTCCTGGGTTGAAGTGATTCTCCTGCCTCAGCCTCCCAAGAAGCTGGGATTACAGGCGTGTGCCATCACACCCGGCTGCTTCTGT<br />ATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAATTCTTGGCTTTAAGTGATCCACCCGCCTTGACCTCCCAAAGTGCTGGGGTT<br />ACGGGCGTGAGTCACCGTGCCCGACCTGCTCTGATCTTTCTGAACTCTGCAGCCTGAGAGATTGGGGCTGGTAAAGACTGCGGGTTGCCAAACATAACTA<br />GAAACGTGGGTTAGGGGGTTGTGGAAGACGAACTGATGCCCCATGGCTTGTAAAGGCTGAGAGTTCCCTTATTTCTCCTTA

Expression



Full and truncated open reading frames discovered in ENST00000470475

In silico ORF/peptide predictions
>peptide 1 (78 aa)
SSQRRAMGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECE

>peptide 2 (63 aa)
PASAERWASLGTTGTSAAKPGARESPTTRSGSMSWGAQLPTPRLAPAASTQSVCGEVTRNTVP


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT002896 (Evalue: 0)

Best hit to Swiss-Prot:
sp|P62243|RS8_RAT (Evalue: 5.0E-44)