Detailed information on ENST00000471215

lncRNA-RNA interactions

Number of interactions: 15

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000442007 antisense antisense ENST00000471215 763 578 noncoding Trans
ENST00000448504 arylsulfatase G protein coding ENST00000471215 759 584 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000471215 504 293 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element bind... novel protein coding ENST00000471215 865 582 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000471215 522 360 UTR3 Trans
TCONS_00105791 arylsulfatase G novel protein coding ENST00000471215 759 584 UTR3 Trans
TCONS_00107864 transient receptor potential cation chan... novel protein coding ENST00000471215 728 587 UTR3 Trans
TCONS_00107867 transient receptor potential cation chan... novel protein coding ENST00000471215 728 587 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000471215 880 584 UTR5 Trans
TCONS_00159951 zinc fingers and homeoboxes 3 novel protein coding ENST00000471215 608 288 UTR3 Trans
TCONS_00159952 zinc fingers and homeoboxes 3 novel protein coding ENST00000471215 608 288 UTR3 Trans
TCONS_00211226 antisense novel protein coding ENST00000471215 887 583 UTR3 Trans
TCONS_00235281 NADH dehydrogenase (ubiquinone) complex ... novel protein coding ENST00000471215 669 421 UTR5 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000471215 786 568 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000471215 786 568 UTR5 Trans

Sequence

>ENST00000471215 (3886 nt)
CTTTCTCTCTGCCCTCACCCAAGCCTCTCAGGTCACATGCAGCAGGGACACCAAGGTGACGGTAGAAACATCAGGTCCCATTTGGACTGTGCCTGTTTGG<br />GGCTAGGGGTTTGGGGTCCTGGATGTCTGGGTGCAGCCATGCAGCCTGGACTCCCTTTGTGAGCCCACACATGCCCCTTCCCCTTGCCACGCCTGGCAGG<br />CTGTCTCCTTCTTTTCTGATGCTGCCCTCCACCTGCATCTGGGACCCTCTCCCTTGGGTGCTGTGGCTCTCCCTTCCTTCCTGCATCCTCATCTTGACTC<br />TCCTGGGTCACTGCTGTCGGCACACAGACATGCTGCACAATTTCTCCTTTTCTAGAAAAGTTCCTTCCTTAACCCCATAACAACAACTAACCACCCCGTT<br />GTTGCTTCCCTTCATAGCAGAACTCAGACCTGCCTCTTCTTCCCCTCCCACCATTCTCTCAATCCACTTCTCAGGCTGACAATTCTGTCTCATCACAAAT<br />TGTTCTTGTCAACTCCACCACCAATTTCCATCAAGCCACATCTGGTCACTTGTGACTTTTTTTCATGTCCTTAATGTGCCTGCTCGGTAGGGTCAAAGAC<br />AGCAGTGCGCTCCCTCCTTGACGCTTCCTTCACTTGGCCTTCCACCCACCATCGTGGTTTCCTCAGCCTTCCTGGCTGCTCCTCACTCCACTGCTGCTTC<br />CTCTTCGAGTGCTGGGCCCAGCCTGGATTGGATCCCTTCTCTACCTGTGGTGCTGTAAATGCCAGCCGGAAGGTCCTAATTCCCAAATGTGTATCTTCAG<br />TCTCTTGCCACCTGGGGTTTCCCAATGCCCCCTCAGTGTCTATACCTGGAGTTTCCATGGGTAGTCTCTCTCTGTTACCCAGGCTAGAGTGCAGTGGTGG<br />AATCTTAGCTCACTGCAGCCTCGAACTCCTGGGCTCAAATGATCCTCCTGCCTCAGCCTCCCAAGTAGCTGAGACTACAGGTGCATGCCACCATGCCTGG<br />TTAATTTTTAAAGTTTTTGGTAGAGATGAGGTCTTGCCATGTTGTTCAGGCTGATCTTGAACTCCTGGCCTCAAGCAATCCCCCTGTCTCGGCCTCCCAA<br />AGTTCTGGGATGACTGATGTGAGCCACCATGCCTGGCCATCCTCCATTCTTTTTTTTTTTTGAGATGGAGTCTCACTCTTTCCCCCCAGGCTGGAGTGCG<br />GTGGCTTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCCAGCGATTCTCTTGCGTCAGCCTCCCGAGTAGCTGGGATTGCAGGCGCCCGCCCAAC<br />TAATTTTTTGTGTTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGTTCTCAAACTCCTGACCTCGTGATTCGCCCGCCTCGGCCTCCCAAAGT<br />GCTGGGATTACAGGTGTGAGCCACTGCGCCTGGCCTCATCCTCCATTCTTTACCATTCTTGATCATTCCTGTCTTTCCCTACATTTCACATCTTGTCAGC<br />CTGTCATTGAGCCCTGCTGTCCGTCCCTCAGTGTGTATCCCCGTGCTGACCCTCCCTGCTTCCAACGAGCCTAATCCAGCACTGCCCCTAGCCTGGATTG<br />CTGAACAGCTGCCTGTGTTGTCTCCTTGCCTTTGCAGTCTTTGCCTCTTTCAGATTATTTTCTGCATAGCAGCAAGACTGGTCTTTTTCTTTTTTTCTAA<br />AATGTAAGTTGTATCTTGTCATTGCTCTTTTAGTGCCTTCATTGCAGTTGTGCTCCCCGCTCATGTTGATTTTCCTTAACACCCTTCACTGCTCTAAGTC<br />ATACACATACCAGTTGACTTGGTTATTATTTGTATCTCCAGCTAGAGTGAAAACTTGGTGAGGACTGGTATTATATCCCTGACATTAAAAATAGTGTCTT<br />GTTAGTAAAAAGTGCTCAGTATTTTTCTGAATGAATAATTGATTATAAGGTAGTGAAGAGGGAGGTTATATCTGAGGTCCAGTTGACATGAGGGAAAGGT<br />CTTAAGACCTTTAAGACATTTAAGAGGAAAAATGAGCCCAAAATGCATGTGTTTGGAAGGCCCACAGCTGGGCACAGCCATGCATGTTCCTCACGTCCAC<br />CATAGGTTTATGCTGCCTGACCCCTTGGGTCTTTGCTCATTTCCCTTAGTTTCCCTAGTCCATTCCCCATGGGGAGCTGGGACCCTTCTGGATGACCTCT<br />TCTCTGAGGCGCCCATCTCGTGCTCCCAGGGAGCACTCCCATCTCCTCCCTCCCAGGGGAAGTACACATTGCCTTATCTCCATGTGTCTTAGGATCCTTC<br />TTGTCCTTACACTGGTGTCTTCAAACGACATGTCCTAAAAGTAAATGTGGGTAAGTTGAATGACCTGAGCATCCATTCCTCAGCTATTCAAAAAGTAGGG<br />GTAGTGCCACCTATCTTGGCAGTGTGTTGAGGGTGCCCAGCACGTACCTTGCCATCCCTCGTTCTGTAGGCTCTCACTTCCAGTTCCTCAGATGAGGTAC<br />AGGGCAGGGAGGAGCTTCTCCCGTTACTGTCATCTCAGTCTAACCACATTCAGGACACTTGTTTATTTTAAATAAACAGGTGAATTAAGAAAAAGTTTTT<br />TAAGTCTTTACCTAATCAGTCTCCAGGCTCTCTTTTTGGCCTGTTCCTCCCTTCCTCCTGGCCGCCTCCCTCCCATGCCTCTCATGTGCCTCCTGCAGGG<br />CTGGGCCCCCACTTCTCTTGGGACCTGTGCTTTGGGGCACTCCCCGTCTTCACCTCCTTCCTTTAGCTCCATTGATGACTTTCCCCCTTGCTGCTTCTCC<br />CATGGCTCACCTCTTGCCCCCTGGTTCGCCACTCTGCCCTCACTTTGTACTCTTTGTAGAATCTTGAGATGACTCCTCCTGTGTCCCCAGCCCTGCTCTG<br />CAGCTGCTCCTGCTTTGTGCTGGCTCATCAGGCTCAGGCATCCGAATGGCAGCTCCTTGGCTTGCCCTGTCTCTGGTTTCTACGGATGGTCACAGGGGTC<br />TTCGGGGTTACCCCGCCCTCTTTCCTTCTTCCCTCATACCCCTCAGTCCTTCCTTTTCAGACCCTCCTTTCCATCCCTGTCTTCCTGCCCCCAAGCTGTG<br />GGACCCTAAGCTCCTGCTGTGAACTGTCGACTGTGCTCTTGAAGTCTAGGTGATGATGTGTCATTGCATTGGTAGAAAGCGGCCTGCTTACTGCTGCTTA<br />GCTGCTTCCCGAAGAGGGAACAGACTGCTCGCTGGTGTTTAGGTCTCCATGCCCGGCCCAGCTCTCTCCTCCTCTGCCCACCCAACAACCTCTGTGGCCC<br />GGATGGATGTTATCAGGAAGGAGGGTGTCCAGAGCGGGGAATTGTGTTATAGGGAAGGTGGAGCATTTGAGAGAAGGGGCATCCGAGGCCACCAGACTCG<br />GAGGTAAGCTTGCCATGGATTCACATGGGGGCCAGTCGGGCAGCCCCATCCATCAGCTGTCCATCAGCTCATAGCTGTGTCTCCGCCACAGGTTCCCATT<br />AAGGATGTCGAGGCGGGGAATGGTGAGGAAGAGTCGGGCATGGGTGCTGGAGAAGAAGGAGCGGCACAGGCGCCAGGGCAGGGAAGTCAGACCTGACACC<br />CAGTACACCGGCCGCAAGCGCAAGCCCCGCTTCTAAGTCACCACGCGGTTCTGGAAAGGCACTTGCCTCTGCACTTTTCTATATTGTTCAGCTGACAAAG<br />TAGTATTTTAGAAAAGTTCTAAAGTTATAAAAATGTTTTCTGCAGTAAAAAAAAAGTTCTCTGGGCCGGGCGTGGTGGCTCACACCTGTAATCCCAGCAC<br />CTTGGGAGGCTGAGGTGGGAGGATCATTTGAGGCCAGGAGTTTGAGACCTGCCTGGGCAACATAATGAAACTTCCTTTCCAGGGAG

Expression



Full and truncated open reading frames discovered in ENST00000471215

In silico ORF/peptide predictions
>peptide 1 (94 aa)
MTPPVSPALLCSCSCFVLAHQAQASEWQLLGLPCLWFLRMVTGVFGVTPPSFLLPSYPSVLPFQTLLSIPVFLPPSCGTLSSCCELSTVLLKSR

>peptide 2 (86 aa)
MSPKCMCLEGPQLGTAMHVPHVHHRFMLPDPLGLCSFPLVSLVHSPWGAGTLLDDLFSEAPISCSQGALPSPPSQGKYTLPYLHVS

>peptide 3 (85 aa)
MSGCSHAAWTPFVSPHMPLPLATPGRLSPSFLMLPSTCIWDPLPWVLWLSLPSCILILTLLGHCCRHTDMLHNFSFSRKVPSLTP

>peptide 4 (65 aa)
MGSLSLLPRLECSGGILAHCSLELLGSNDPPASASQVAETTGACHHAWLIFKVFGRDEVLPCCSG

>peptide 5 (65 aa)
MPLMCLLQGWAPTSLGTCALGHSPSSPPSFSSIDDFPPCCFSHGSPLAPWFATLPSLCTLCRILR

>peptide 6 (58 aa)
MAAPWLALSLVSTDGHRGLRGYPALFPSSLIPLSPSFSDPPFHPCLPAPKLWDPKLLL

>peptide 7 (55 aa)
MLSGRRVSRAGNCVIGKVEHLREGASEATRLGGKLAMDSHGGQSGSPIHQLSISS

>peptide 8 (53 aa)
LSLCPHPSLSGHMQQGHQGDGRNIRSHLDCACLGLGVWGPGCLGAAMQPGLPL

>peptide 9 (52 aa)
MPGPALSSSAHPTTSVARMDVIRKEGVQSGELCYREGGAFERRGIRGHQTRR


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT121414 (Evalue: 0)

Best hit to Swiss-Prot:
sp|O43709|WBS22_HUMAN (Evalue: 5.0E-22)