Detailed information on ENST00000471487

lncRNA-RNA interactions

Number of interactions: 18

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263955 serine/threonine kinase 17b protein coding ENST00000471487 560 283 UTR3 Trans
ENST00000324537 SH3-domain GRB2-like 3 protein coding ENST00000471487 536 286 UTR5 Trans
ENST00000450928 antisense antisense ENST00000471487 529 287 noncoding Trans
ENST00000467462 inter-alpha-trypsin inhibitor heavy chain family, member 4 processed transcript ENST00000471487 549 286 noncoding Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000471487 596 290 CDS_UTR Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000471487 519 290 CDS_UTR Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000471487 515 288 UTR3 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000471487 609 285 UTR5 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000471487 613 286 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000471487 609 285 UTR3 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000471487 613 286 UTR3 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000471487 514 285 UTR3 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000471487 514 269 UTR5 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding ENST00000471487 560 283 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000471487 541 287 UTR3 Trans
TCONS_00229218 leucine-rich repeats and death domain containing 1 novel protein coding ENST00000471487 638 287 UTR3 Trans
TCONS_00229219 leucine-rich repeats and death domain containing 1 novel protein coding ENST00000471487 638 287 UTR3 Trans
TCONS_00234854 zinc finger and BTB domain containing 10 novel protein coding ENST00000471487 603 278 UTR3 Trans

Sequence

>TCONS_00234854 (2853 nt)
AGGAATTGCTGATGGATCAGTGAGCCTGTGTTCATGCCAGTGAGCTGCTGTGGCTCAGATACTGATACTTTCTTTCCAAACAGCATAAGAAGTGATTGAG
CCACAAGTATACTGAAGGAAGGGCTCCCTCGAGTTCTGGTGTGAAGAGATAAATCACCAGGCCCAGTCGAAGAATATCAGCTGCTGCTTCAGGTGACCTA
TAGAGATTCCAAGGAGAAAAGAGATTTGAGAAATTTTCTGAAGCTCTTGAAGCCTCCATTATTATGGTCACATGGGCTAATTAGAATTATCAGAGCAAAG
GCTACCACAGACTGCAACAGCCTGAATGGAGTCCTGCAGTGTACCTGTGAAGACAGCTACACCTGGTTTCCTCCCTCATGCCTTGATCCCCAGAACTGCT
ACCTTCACACGGCTGGAGCACTCCCAAGCTGTGAATGTCATCTCAACAACCTCAGCCAGAGTGTCAATTTCTGTGAGAGAACAAAGATTTGGGGCACTTT
CAAAATTAATGAAAGGTTTACAAATGACCTTTTGAATTCATCTTCTGCTATATACTCCAAATATGCAAATGGAATTGAAATTCAACTTAAAAAAGCATAT
GAAAGAATTCAAGGTTTTGAGTCGGTTCAGGTCACCCAATTTCGAAATGGAAGCATCGTTGCTGGGTATGAAGTTGTTGGCTCCAGCAGTGCATCTGAAC
TGCTGTCAGCCATTGAACATGTTGCCGAGAAGGCTAAGACAGCCCTTCACAAGCTGTTTCCATTAGAAGACGGCTCTTTCAGAGTGTTCGGAAAAGCCCA
GTGTAATGACATTGTCTTTGGATTTGGGTCCAAGGATGATGAATATACCCTGCCCTGCAGCAGTGGCTACAGGGGAAACATCACAGCCAAGTGTGAGTCC
TCTGGGTGGCAGGTCATCAGGGAGACTTGTGTGCTCTCTCTGCTTGAAGAACTGAACAAGGTGAGGCATTTTCACTGTGTAGACTTGCCCTGGTCTTGAG
TTTCAGAGTGGCAATATCCCAGTGAGCATGGCTAGGTGGAGGGTAAGTATACCTACGTGCATCATTGGCCAGTATGCAAAGAGCAAGGATGACATCAGAC
CCTGGTGAACCCGTGGAGTCGTGCATGAGTGGTAGCGTCTGGGCAGCAGAGTCTAGGTTGCAGCTCAAAAGACAGAGTTGATAGTTTTGTCAGGCAGAGG
TGTTGTGGAGGAGTGTATCATTGCTGAGGAGGTCTATGATGGATGGTAGAGCAGCAACTAAGCTGGCCTCAGAAGTCCAGAAGACCTGGGAATTAAAGAG
AAGAGTGAAGGTGTGAGTCATAAGCCAGCAGGCTTAGTACAAGTAAGGATATATCTATACCAGAAATTAGGGCAAGGAGTGGGTCAGACAAAGGTGAACC
ATATAAAATGACTGAACTGCAATGGACCTTAAGGGGCATCTGGTTTACCAACCTCATTTTGCAGATCAGAAAACAAAAGACCAAGGGGCCAATAGTTCCT
CTGGTAGCAATAGTTTTGAATTAGAAGCATGGTCACTTGATTCCTAGTCCAGTGCTGTATTAGTCTGTTCTCACATTGTTATAAAGAACTATTTGAGACT
GGGTAGTTTATAAAGAAAAGAGGTTTGACTCACAGTTATGCAGGATGTACAAAAGGCATATCTGGGGAGGCCTCAGGAAACTTACAATCATGGTGGGAGG
CGAAAGGGAAGTAAGCACATCCTTATATGGTGACAGGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGATGGAGAGAGAATGGGGGAGATGCTACAC
ACTTTTAAACAACCAGATCTTGTGAGAACTGTATCATGAGACAGCACTTGGGGGATGGTGCTAAACCATTAGAAACCACCTCCATGATCCAATCATCTCC
CACCAAGCCCCACCTCCAACATTGGGAATTATAACTCGACATAAGATTTGGGTGGGGACACAGAGCCAAACCACATCAGGTGCTATGCCCTCCACATGAT
GCTCTCTTAGGAAGGTTCAAGTATTAAGACAAGTAAGACAGAAAGAAGGAAATAAATATCTAGGAATCAGAAGAACTCAAGTCACAGAAAAGAAGGACCC
CAAGACCAGTTCACAGATACTGTTCAGCAAGTAGATTTCCATATTGAGCAGAACTTCTATTCCAGCCAGAGACCTTGCTTCTGCTGCTGCAGTAGAAAAC
CCCAGAATAGTATTCATCAGAGGACTGTGGAATGTTTACTTCTCCCTTTGTGGATCTCAGTTTCCTCATCTGTAAACTGGGGAAGGGGATTAGATTCTGG
GGTTTCTTCTTGCTCTTGCCTTCGTTGCCTCAATTCTGGACATGAGCAATAGTTGAGACTAGTTCGCTCCAGGCAGATCCCAGGTGGCTTGAACAGAAAA
CAGCATTGTCAGTTGAGAAGAACAAGAAGGAAAATGGCGGGCACTTGGGCGCCTGAGTGGACTTAATGTTGAGTGGAAGGGGACTGCCTTCCTTTGCTGC
TTTCCAAGTTAGCCTGGTGTAGTAAAAGTAGATGGGAGCCTCAAGAAAGAAGTAAAATTCCAAATCTAGGGCCGGGTGCAGTGGCTCATGCCTGTAATCC
TAGCACTTTGGGAGGCCAAGCCGGGCAGATCATGAGGTCAAGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCTGTTTCTACTAAGGATACAAAA
ACAATTAGCTGGGCGTGGTGGTGCATGCCGGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCCCTTGAACCTGGGAGGCAGAGGTTGCAGTGAG
CTGAGATCATGCCACCGCACTCCAGCCTGGCTGACAGAGCAAGACTCCATCTCG

Expression



Full and truncated open reading frames discovered in TCONS_00234854

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.