Detailed information on ENST00000473258

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000375234 AhpC/TSA antioxidant enzyme domain containing 1 protein coding ENST00000473258 537 308 UTR3 Trans
ENST00000446045 AhpC/TSA antioxidant enzyme domain containing 1 protein coding ENST00000473258 537 308 UTR3 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000473258 530 276 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000473258 600 268 UTR3 Trans

Sequence

>TCONS_00118919 (5432 nt)
TGCATATTACTATTAAAGCTAAGACTGTCTAGAATTTCTAAACAACAACAACAACAACAAAAATCTAACTTAAAATTTACTTTTTGCAGTATTGCAAAAT
GAATCCTAAATTATTGGCTTAATCACCTGTGTTAAAGAAGTTTCAATGCAGAAACTAGACAAAACAACTAACAAAATCACCATGTCCTTTATTATTTATT
CTTGAAATTAGCAATCTGTAGAACTGATCACATTTTGTCCGAGTAGACATGACTGGGCCAATTGTATAGCCCTGAAGGAACCATCATTTTGTGTTTACTA
ACGTTTTACTTATTGATTCTAAGATGCACAATTTTCTTCTCATTGGGACACTTCTGAAACTGAAATGTGACTTAGAATTGACAATATATCATGGTTTATT
GGTAGCATTTTGTGTTACTTAGTGGAACATAAAATAATGGTGCATCATAAAATTAAGAGCTCTTATATTGGATACAATACAGTATTTGGTTGGCCATGTT
CCATGTGAATATATATCATCAATTAGCATAAAATGGTATATTTGGGGGAAATACCTGACTTTATGTTAATAATAATTTAAAGAACAAACTAATCCCACAG
CTGAAGTAAGTTAAATAGCTACAGGGATTTAGGAAATGGTCCTCTCCAGGCTGTCTGTTGTTCATCGCTGTGTGAGGATGTTTTCTGGTTAGTTGTCATG
TGTGGGTTATGATGAGCCCAAAGGAGTGTTTTTTATCTTGAAGTCTTAAAAAATAGAAGTCTGTTGGTCAAGATCTGAAAGAGTAAAATTTAACCACAGC
TACATTTTAAAATAAAGTTAAAAATTGGCCGGGTGTGATGGCTCATGCCTATAATCCCTGCACTTTGGGAGGCTGAGGCAGGAGGATCACTTGAGGTCAG
GAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATGCAAAAATTAGCCAAGCATGATGGCTCATGCCTGTAATCCAGCTACTG
AGGAGGCTGAGGCAGGAGAGTCACTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATCATACCTCTTCATTCCAGCCTGGGCAACAGAGTGAGACT
CAGTATCTAAATAAGTAAATAAATTAAGTAAGTTAAAAATTTGGTAAGTTTCCTTGGTACCCTTTGAACTGACCAATGCTCAAAATGTAGACGGCGGAAA
GTGTTTTCATTCAGGCAAATCATACCTGCATCCAAGGTATGGAAGTACTTTATACTGTAACAACAATGCCGAGTGAGAAGGTGATTGAATTTTCTTGTTT
TGGGGACCATTAAACTGATGAGGAACATGTTGATGATTGCAGCATAAACACCTCTCAGTCTGTCTTCCTTCAGTTTGCTCAAGGAAGTACTTACATCGTG
ATTTGGAAATCAATATGTTTGGGAAATGTCAAAGCTGATGCCTTTAAAAATGCATTGAAACACTATGGGAATATCAAACTATGAAAAAGACAAGATTTTC
CAATCAATATGTTTTCCACTTTGAAGAATACATATATTTTTTGCTGATTATAAAGTTAACAGATATGCATTGTCAAGCATTCAGGAGGTACAGAGAAATA
TATTACACGATTCTCATTGTGACAGCATTGCTGGCTTTTGATGAAAACCAATAGTGACCCGATGCATAGCCTTCCTATTTTTTTCTATGAATATTATTGC
TTGTGGGAAGGTGCATGCATCGCACATGCACATCCACTCCTGCACATCATTATTACAAAAATGGACTGTGGGGCTTAGGGTGCCTTGCGCCCCAGTGTTT
TTGAATGGTTGTTTTTAGGATGTTCTAGGTAGGCACCTGTGGCTTCTGGGAACAGGTGGGATTCCCAGAACAGGGTTTTAACCTAACATTGTGCTTGCCT
CCATTTCCTCTCTTCTATTTGGTTACTTTCCTGAAGCCCAGTGACCAATAGTAAGGAAGTTTCAGCAGACAGTGGTCTGAGTCAGGCAGCCTTTCCCCTC
TCTGTTTTCCAAGCAAACTTAGTTACATTGGTATTCTAGGTTAGGAAGCCGGGGAAGGTTGTGGATAATTTTCAGTCCCCATTGTCTTTTAGGCTCCCAC
TAGGTTCTCAATAATAAAGAAGAGCAAATTAAGGAAGACTCAGCCATGCGCTCCTCTCACATAAAGAGAAGGCTCTAGCTTCCTACAGGTTATACCTGGG
GGGCAGACTGATTTCAGAGGGAAAAGATGAACAACTATTGCATCCAAAGACGTGTCGTTCTAGGGAAAAGTCCAGGTTAAGTTCAACGAGGGCCAGCCAT
CTCCCTTGGTACTCCAGGACATTTAAATACTTTTTTTTTTTTTTGCTTTAAAACAGTTGCTTTAACATATGCACTCATAGCTGAGTAGAGTCCAGCCAAA
ACGACATGTCTCAGAAGTCAAGATTATGTGGAGTTTGCATTAGAAGCCTTCTTAAGAACATAAAATCCTCCGTTTTCATGCTTCAGAAGTAGAGAAGTAC
AGGTTTTTGTCTTTGAATAGTGCCGGGTTCTCACCTCACTAATATATTTCTCTTGGTTTTCCAAATATCTTCTTGTCCACAGTAACAGTGTCCTTATTTT
CCACTAGTAAATCTTACAGGGTCTCAGTAGTGACTCTCACTGAAATAAGGGCAGAAAACACCAGTGCCGTGGTGTGGAACTGGAGGGCTAGGGTGGAGGG
CCAAGGAAGCTGGAGAAGCCAATCAGACGGGGAGTGGAGTGTGCTGCTGTGAGGCCACTCATGGGCTGGGTGTCCGTGGCTCTGGGCAGACCTCTCGTGA
CTGGTTCAGCAGAGCCCAGGGGACTGGGAATTGAACAGCTAAACACAGATGGTCAGGACTGAAGTGCACTTGAAACAAATAAAATAGAGCAAATAGGGTC
CATTGGCCAACGCTCTGGGAAGGAAGGAAGAATAGGGAGATCATTTGACGCCGGCCTCACGCTAACAGGGAAGCCACCAGTAAATGAGGAATAAATTTTG
ATGGTTAAATTACCTTGCCTTGTCAGTTCTCTCCAGGACCTTCCTTGACAGCCAGGCATTTTCCTTCAGTTATTGGCATATTTGAGAGAAAGAAGGTTGT
TTTTGTAAATTGTCTTCATTTTATTCTGACTTCCTGGAGTCTTCAAAGGCTCTCGTGGGGACCACTGGCTTTCTGGGCCCTGAGAGCGTCTGCAACTAGG
AGGTGTTGTAACTGTGGAGCCACCAGCCACCAGCCTGGAATTTGGGTGACAGCAGCAACCAGGAAATGTTTTAGACCAATTCTGAGCCTCAGTCCTGTGC
ACCTTTGAGTCTGGTCCATCGTGGGTGATCCAAGCTATGATTATCCACTGAAGACTTAGGTTTTCCTTGTCCTTTTTGGTATCTATCTGAAGCACAGATG
CTCACCACCTCCGCAGCTGTGAGCAGCCTGCCTCGCTGGGGACAAAGGAGATGGAGAAGCATCTCTTTGTAGGGGAGAGCTGGATAATTCCAGCCTGTTA
GCTACTCACAGGAACATGCAGAATTATTGGCTCCAGGGAGTTTTGGAGAAAGAAGGTTTACGTTTTCAAACTTACAGATAACAGTTGACATCAATGCTTC
TCTTTCCCAGAACAATCTGGAGTTTGCCAGAAAACTCTGTAAACAGGAGTCGTGCTGTGTGTGAACTGTAAACTCTTCTCTCCAGGCGTCGAGGGGACCT
TTGCTTTACTTTGCAGCTGGGCTACATCAGACGTGTGCATTGGAAACATAAACTTCCTTAACTGGGAAAAGAATGCTTCTCTGTCTTCAAAATAGTTCTG
CTATGTGACATTTTTGCCATCATGAATTTTACATCAGTGCTAGCTCTTTGTTTTACGTGTTTCATTTGGCAGGTCACAAAGGCTCTTGGCTACCACACAT
ACGTGCATACACACACACACACACACACACACACACTCATAAAGGATTTTCTTTTCTGCTTTACCTTTAATTTTCAGTCTACTTGGCTTGTAATGAAAGG
TAGAGCCTTATTTTTGAACTATATCCCAACAGAATCGAATTTCCATTTTGCCAAGAATTATAAAACCCTGAGGTTTTAAAATTCAGTTTCTTTTCTGGGG
ATTTAACATGGAAGGACTTGGAGGGCAAATGGCCCAGTGATTGGAAAGGGGAAAAACAATTCATTTCATTTAAAATTATTCAATAACCATTGCCAGCATT
TGGGATTCTGAGTGCTGTTTATGAAGCCCTTTCATTGATATAATTTCATCTATCTCTCACAAGGCTGTAAGCAATTCCTATGTCCATATGGCAGTGAGGA
AATGGAGATTTGAGCAGGTTAAGGGAGTTTTCACCTGGAAGCTCTTCTTTTTTTTCCTTCTGCCACAGTAGGGTCATCAGACTGTCAGCCCCAGCACTGG
GAGCCGAGTAACACGCATGTTCTCATTAATATCCTTTTCTCATGTTTTTATTAAAGATATATGCAAGTTGCCGAAAGACGAAGGAACTTGCAGGGATTTC
ATATTAAAATGGTACTATGATCCAAACACCAAAAGCTGTGCAAGATTCTGGTATGGAGGTTGTGGTGGAAACGAAAACAAATTTGGATCACAGAAAGAAT
GTGAAAAGGTTTGCGCTCCTGTGCTCGCCAAACCCGGAGTCATCAGTGTGATGGGAACCTAAGCGTGGGTGGCCAACATCATATACCTCTTGAAGAAGAA
GGAGTCAGCCATCGCCAACTTGTCTCTGTAGAAGCTCCGGGTGTAGATTCCCTTGCACTGTATCATTTCATGCTTTGATTTACACTCGAACTCGGGAGGG
AACATCCTGCTGCATGACCTATCAGTATGGTGCTAATGTGTCTGTGGACCCTCGCTCTCTGTCTCCAGGCAGTTCTCTCGAATACTTTGAATGTTGTGTA
ACAGTTAGCCACTGCTGGTGTTTATGTGAACATTCCTATCAATCCAAATTCCCTCTGGAGTTTCATGTTATGCCTGTTGCAGGCAAATGTAAAGTCTAGA
AAATAATGCAAATGTCACGGCTACTCTATATACTTTTGCTTGGTTCATTTTTTTTCCCTTTTAGTTAAGCATGACTTTAGATGGGAAGCCTGTGTATCGT
GGAGAAACAAGAGACCAACTTTTTCATTCCCTGCCCCCAATTTCCCAGACTAGATTTCAAGCTAATTTTCTTTTTCTGAAGCCTCTAACAAATGATCTAG
TTCAGAAGGAAGCAAAATCCCTTAATCTATGTGCACCGTTGGGACCAATGCCTTAATTAAAGAATTTAAAAAAGTTGTAATAGAGAATATTTTTGGCATT
CCTCTAATGTTGTGTGTTTTTTTTTTGTGTGTGCTGGAGGGAGGGGATTTAATTTTAATTTTAAAATGTTTAGGAAATTTATACAAAGAAACTTTTTAAT
AAAGTATATTGAAAGTTTCCTGGGTGTGACGTT

Expression



Full and truncated open reading frames discovered in TCONS_00118919

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.