Detailed information on ENST00000473434

lncRNA-RNA interactions

Number of interactions: 33

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000367590 xenotropic and polytropic retrovirus receptor 1 protein coding ENST00000473434 535 251 UTR3 Trans
ENST00000382142 myotubularin related protein 12 protein coding ENST00000473434 558 289 UTR3 Trans
ENST00000448214 antisense antisense ENST00000473434 526 285 noncoding Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding ENST00000473434 637 281 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding ENST00000473434 655 294 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000473434 643 295 UTR3 Trans
TCONS_00009095 xenotropic and polytropic retrovirus receptor 1 novel protein coding ENST00000473434 535 251 UTR3 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000473434 621 288 UTR3 Trans
TCONS_00020768 processed_transcript novel protein coding ENST00000473434 630 292 UTR5 Trans
TCONS_00030165 antisense novel protein coding ENST00000473434 526 285 UTR5 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000473434 613 296 UTR3 Trans
TCONS_00037377 NAD synthetase 1 novel protein coding ENST00000473434 607 295 UTR5 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000473434 655 294 UTR3 Trans
TCONS_00053851 transmembrane protein 263 novel protein coding ENST00000473434 618 298 UTR5 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000473434 536 292 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding ENST00000473434 557 288 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000473434 614 298 UTR3 Trans
TCONS_00161482 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding ENST00000473434 639 294 UTR3 Trans
TCONS_00185516 transcribed_unprocessed_pseudogene novel protein coding ENST00000473434 605 294 UTR5 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000473434 624 346 UTR5 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000473434 600 297 UTR5 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000473434 621 287 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000473434 600 297 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000473434 621 287 UTR5 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000473434 604 290 UTR5 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000473434 602 295 UTR5 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000473434 618 290 UTR5 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000473434 608 285 UTR5 Trans
TCONS_00240045 zinc finger protein 706 novel protein coding ENST00000473434 610 296 UTR3 Trans
TCONS_00240046 zinc finger protein 706 novel protein coding ENST00000473434 610 296 UTR5 Trans
TCONS_00247297 family with sequence similarity 166, member B novel protein coding ENST00000473434 611 294 UTR5 Trans
TCONS_00251977 G protein-coupled receptor 82 novel protein coding ENST00000473434 582 294 UTR3 Trans
TCONS_00253055 uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) novel protein coding ENST00000473434 664 282 UTR3 Trans

Sequence

>TCONS_00253055 (2495 nt)
ATTTTGATCTCAGCATGTGCTGATGGAGTAATGAAATAAAGACAACACTCTGCAAATGGCTGGATACATTAAGTGAGAAGCAACTTGTAAAGCACCCAGG
AAAATATCTGACACATTGAAGATGGCAGGATCTGCCTCAGGGATCTGCTCAAGCAACGTGGGATCCCCACTTTTTCACTCTGCTGAATACTCGACCATAT
TACAAGGCAACAACTGTTCTAAGCTGGAACTAGAGCATGAACTGGAATGAGGAAGGACCAGTAAGGCAAAGTGAAACACCCAAACCACCAGCATGCTCCC
ATCCAGAATGGTACCTGTTCAGGCTTCAGACCCGGCGGGACCCAGGCATACTCTTCCAAAGCACAGCCTGAGTCATCATCTGAGGTCGAGTTCCTCTGAA
AGTCAAACATGAGTTTGCTGATGGTCTTCTCCATCTCCAGCGGCATCACTGTCACCATGTGCTCCTCCTGGGGACACTTGCAGTGCAGGCAGATCTTCCT
GCAGGCAGTAAAGGTAGAAGGTGAGAAAGAGGAAAAAACCTTTTTTTTTTTCCAAGAGCCTGCCAGTCACTAGCCCCTGGATCCCAAACCATAAACACAT
TCCTTGGCAATGGGCATCGGGCAAAGGCATCGCGAGCAGTGTTCCAGAACATGACTGTCTTTGCAGAGGGCGTGGTACACGCATGTGAAAACAGCATGAA
AGGTCAGAGGCCACCAGGTAAGCATGCTAAGGGTGTTTACATGTGGACCCCAGCCTTCTCTTCTAAATCAATACCCCAAGAGGAATGGTAATATAGTTTT
TATTTTACTAGGTAGACCACTGGATATGGCCCATGACCACAATTTCCTTGACTGCAATAGCAATTAAATATACATAATACATATGTTGACCTGAAGTGTT
ACTTGTAGATTTAACAAATACTGACAACATACTGCTTTTATAAAAGGTTCCTAAGCCCTGGAAAATGGAGAAAATGGTTTTAAAAATGCAGGTAAAATGT
TCTTTAAGAAGAAGAGCAAACATACATATTTTTTCTCATGAAACGTATCTGGCCCTAAGATCTCATAGGAAAGACAATTTCACCTCCATTAAAGATCCCT
GTAGGTTTGGAATTCTAATTAGAAACCCAAATTTTCCCTATGTTGGTGGGGTTTTTTATATACAAGAAGATCATGCATGTGAATTATTTCAAAAGGTAGC
AGCCAAAGATAAAAATCTCCCAAACTGAACATTTCTCTTTTAAGGTTACCATCTGTTCTCTTATCCATAGCTACAGAAATGATGAAGCAATAAATATGTT
GATGTCAGCAACACAAAAGCATTTCTAGCTTCCACCAATAAAATAAAAAGAGAGAAAAAAAGAATAGAGGAGGAAAATTTTAAGGAAATAAGTTATTCCA
TGTTCACTCTTTTTAAAATTATTAGTTTCCGTAGCACCTTATAAAGGTGATAAAAGAGCCCAGAATTTTAATCCCCAGATGTGCCTGAACGTTCTGATAA
CAGCTTTGTGAAGATACAATGTACAAACCATAAAACTCACCATTTCAAAGTGTACAATTCATGGACTCTTAATACATTCGGAATTGTGAATCATCACTAT
CTAATTTTCATCCCCTCCCCAAAAGAAACCCCAGGAGCATTGGCAGTTATTTCCCATATCCCTCTGCCCCCAGGCTCTAACAACCACTAATCTATTTTCT
GTCTCTATGGTTTTGCCTATTTTGGACATTTCATATAAATGCAATCATATAATATGTGGTTCTTTTGAAGTTGGCTTCTTTCACACAGAATGACTTTTCA
AGGTTAATCCAAGTTATAGCATGTATCAATCCTTCATCCCCTTTTATTGTTGAATAATATGCCATTGTATAGATATACCACATTTTCATTGATCAGTTGT
GCACATTTGGACTATTTTCACCTATGGCTTTTATGAATAATGATGCTCTGATTACTTATGTATAATTTTTTGTGTGGATATTTGTTTTGTTTTGTTTTGT
TTTTTGAGACAGGTTCTCATTGTTTCCCAGGATGGAGTGCAGTGATGCAATCACGGCTCACAGCAGCCTTGACCTCCTGGGCTCAAGCGATCCTCCTGTC
TTAGCCTCCCAAGTAGCTGGGACCACACAGGGGCATGCCACCACGCCTGGCTTTTTTTTTTTCTGAGACAGAGTCTCACTCTGTCGCCCAGGCTGGAGTG
CAGTGGTGCCATCTCAGCTCACTGCAACCTCTGGCCGCCCAGGTTCAAGCAATTCTCCTGCCTTGGCCTCCTGAGTAGCTGGGACTACAGGCATGCACCA
CCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCATGATCCACCCGCGTCAGC
CTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCCCTCAGTCGGATATATGTTTTTAATTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCT

Expression



Full and truncated open reading frames discovered in TCONS_00253055

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.