Detailed information on ENST00000473828

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000375140 coiled-coil domain containing 153 retained intron ENST00000473828 512 290 noncoding Trans
ENST00000415318 coiled-coil domain containing 153 protein coding ENST00000473828 512 290 UTR5 Trans

Sequence

>ENST00000415318 (963 nt)
GCTCCCCCATCTCCGCCGCTATTACCACTGAACCCGGACCCCCTACCCAGGTCCAGGGCCAGCCGCCATGACGAACGTGTACTCCTTGGATGGGATTCTG
GTGTTTGGTTTGCTCTTTGTTTGCACCTGTGCCTACTTCAAGAAAGTACCTCGTCTCAAAACCTGGCTGCTATCAGAGAAGAAGGGTGTTTGGGGTGTGT
TTTACAAAGGTGAGGCCATGTCTGGACAGGGAGAAGAGACTGCCATCTCTGGACAGTGTGGAGCTACAAAGTAGGGAGTACAGTGAGCTGGGATTATATT
TGGTTTCATTTTTAGAAAAAAATCCCTCCGATTGGGTCTGAGAGTCTGGAAAATTAATCATTCTCCAAAGTTGAGGGAAGAGGTAAAAGTTAAAATTTGC
TGGGTGTGATGGCTCATGCCTATAATCTCAGCACTTTGGGGGGCCAAGGCAGGAGGATTGCTTGTGTCCAGGAGTTGTAGATCAGCCCGGGCAACACAGT
GAGACCCCATTTCTACAAAATATACAAAAATTAGCCAGGTATGGTGGCACGTGCCTGTAGTCCCAGTTACTCAGGAGACTGAGGTGGGAGGATTGCTTGA
GCCTAGGAGGTTGAGGCTGCAGTGAGCCATGGTGGAGCCACTGCACTCCAGCCCAGGTGACAGGGTGAGACCCTGTCTCAAAAAAAAAAAAAATTATTTA
AAAACATAATTGTCTATTTTAGCATCCAGATGATTTTTGTATTCTCCATGGAGTAAAAGTATACACATCAAATCATTTTAGGCTGGGGTGGAATTCCTCC
CTTCAGTGGGAAAAAAATTTTTCTACGGAAAATTTTTCTTGATTTTCTGTAAATGGTACATTGGAGTCTGTTTTAAGGTTTGAGTTAATTAACTCAGATG
CTTTTTTGTACTTTTTATTTGAGGCACATTCATTTGGAATCCTATCTACCTAAATTTTTTTTTG

Expression



Full and truncated open reading frames discovered in ENST00000415318

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.