Detailed information on ENST00000474008

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000579685 adenomatosis polyposis coli down-regulated 1 nonsense mediated decay ENST00000474008 516 232 CDS Trans

Sequence

>ENST00000579685 (729 nt)
GAATGTTGGGGGACATGGCCATTGAGGGAGGCAACTTCACCACAGCCTATTTCAAACAGGTACTAAGTAAGATCTTTTAGCCTATGCAGGAGAAAACTGC
TGCGCCTTCAGGAGTTCCTCCTGTTTATTAAAGAAGACTGCTTTGGACTTTGGGAGGCTGAGGCAGGCGGATCACTTGAGGCCAGGAGTTGGAGACCAGG
CTGGCCAACATGATGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGTGGGCGCCTGTAATCCCAGCTGCTTGGAAGGCTGAGGCA
GGAGAATCACTTGAACCTAAGAGGCGGAGGTTGCAGTGAGTTGAGATGGCGCCATTGCACTTTAGCCTGGGTGACGAGCAAAACCGTCTCAAAAAAGAAA
AAACAAAAAGGACTGCTTTGGCCTTCACAGACGTGCGTCTTCAACCAGTGGTACCCCTGACAGTTCCAAGAACCATCAGCCTTACAGCTTAGACCTAAGA
CTAGCATTCTGTTGACTCTGACACTTCCCTCTGTTCTATCCGATAGCAGACCATCCGAGAGCTGTTTGATATGCCCCTGGAGGAACCTTCTAGCTCATCC
GTGCCCTCTGCCCCTGAAGAGGAGGAAGAGACTGTGGCCAGCAAGCAGACTCATATTCTGGAGCAGGCATTGTGTCGGGCAGAAGATGAAGAGGATATCC
GTGCAGCCACCCAGGCCAAGGCTGAACAGG

Expression



Full and truncated open reading frames discovered in ENST00000579685

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.