Detailed information on ENST00000474641

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000370888 leucine rich repeat containing 1 protein coding ENST00000474641 718 245 CDS Cis
TCONS_00210928 leucine rich repeat containing 1 novel protein coding ENST00000474641 718 245 UTR3 Cis
TCONS_00210939 leucine rich repeat containing 1 novel protein coding ENST00000474641 718 245 UTR5 Cis

Sequence

>ENST00000474641 (456 nt)
AGAGGCAAAGAATCTGCATTTCCATACCGTCTCATTGTCTTCTTCATCTTTCTCATCCTCCACAAATCGGATCGCACTGACTCTGTTGACAGCACGCTCG<br />TTCCAGGCTTCATCAGAGACATCATTTACCAAGTTCTCCAGTGCACCACAGCGAGGCAGATTCTCTGCAGTGACAAAGACCACATAAGCAGGGAATTGCG<br />TTTCATGTGATCAGTAAATGCTATGAACTTTGCGGCTGACAAGGTTTCAATGTAAAGAGAGAAAGTCAAGGTGATTTTGGAAGGACCCAGAAGGAGGAGT<br />TCTTTACCTCTGATGGCCACAGCCTCACTGACAGGGCTGGTGTGAAGCTGCAGGATTACCTGTTTCCAGGAGCACCTGATGAATCAGGCCAAGAGGAAGG<br />AGGTGCCTGCGGTGTCAAAGCATTTAAGTTGCAGCCAAAATAAAGATTAAACACCA

Expression



Full and truncated open reading frames discovered in ENST00000474641

In silico ORF/peptide predictions
>peptide 1 (69 aa)
RGKESAFPYRLIVFFIFLILHKSDRTDSVDSTLVPGFIRDIIYQVLQCTTARQILCSDKDHISRELRFM

>peptide 2 (61 aa)
EAKNLHFHTVSLSSSSFSSSTNRIALTLLTARSFQASSETSFTKFSSAPQRGRFSAVTKTT


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT113203 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q9BTT6|LRRC1_HUMAN (Evalue: 2.0E-22)