Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000427746 | holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) | protein coding | ENST00000475072 | 528 | 255 | UTR5 | Trans | |
ENST00000568559 | transmembrane protein 170A | nonsense mediated decay | ENST00000475072 | 550 | 255 | UTR3 | Trans | |
TCONS_00067572 | DCN1, defective in cullin neddylation 1, domain containing 2 | novel protein coding | ENST00000475072 | 609 | 255 | UTR3 | Trans |
>TCONS_00067572 (657 nt)
GAGGACTAGCGAGGAGGAGTTGAGAGAACGGAGCGGACGCCATGGCGACCAACATCGAGCAGATTTTTAGGTCTTTCGTGGTCAGTAAATTCCGGGAAAT
TCAACAGGAGCTTTCCAGTGGAAGGAATGAAGGCCAGCTGAATGGTGAAACAAATACACCCATTGAAGGAAACCAGGCGGGTGATGCAGCTGCCTCTGCC
AGGAGTCTACCAAATGAAGAAATAGTGCAGAAGATAGAGGAAGTACTTTCTGGGGTCTTAGATACAGAACTACGATATAAGCCAGGTAAGTTGGAGATAA
TTAACTGTCTCAAAAATTTTCTTTTAAGATTTTTTTGAAATTTGAAGGTTAATGTTAGTTTTTGACTTCAGTATTTAAGATATTTATTAAATTAAAAACT
TTAGGCTGGGTGCGATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCACCTGAGGTCAGGAGTTCCAGACCAACCTGGTCAA
CATGGAGAAACCCCCATCTCTACTGAAAATACAAAAATTAGCCGGGTGTGGTGGTGGGTGCCTGTAATCCCAGCTACTTGGGAAGCTGAGGCAGGAGAAT
CGCATGAACCCAGGAGGCGAATGTTGCAGTGCGCTGAGATTGCGCCATTGCACTCCAG
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.