Detailed information on ENST00000475072

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000427746 holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein coding ENST00000475072 528 255 UTR5 Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay ENST00000475072 550 255 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000475072 609 255 UTR3 Trans

Sequence

>TCONS_00067572 (657 nt)
GAGGACTAGCGAGGAGGAGTTGAGAGAACGGAGCGGACGCCATGGCGACCAACATCGAGCAGATTTTTAGGTCTTTCGTGGTCAGTAAATTCCGGGAAAT
TCAACAGGAGCTTTCCAGTGGAAGGAATGAAGGCCAGCTGAATGGTGAAACAAATACACCCATTGAAGGAAACCAGGCGGGTGATGCAGCTGCCTCTGCC
AGGAGTCTACCAAATGAAGAAATAGTGCAGAAGATAGAGGAAGTACTTTCTGGGGTCTTAGATACAGAACTACGATATAAGCCAGGTAAGTTGGAGATAA
TTAACTGTCTCAAAAATTTTCTTTTAAGATTTTTTTGAAATTTGAAGGTTAATGTTAGTTTTTGACTTCAGTATTTAAGATATTTATTAAATTAAAAACT
TTAGGCTGGGTGCGATGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCACCTGAGGTCAGGAGTTCCAGACCAACCTGGTCAA
CATGGAGAAACCCCCATCTCTACTGAAAATACAAAAATTAGCCGGGTGTGGTGGTGGGTGCCTGTAATCCCAGCTACTTGGGAAGCTGAGGCAGGAGAAT
CGCATGAACCCAGGAGGCGAATGTTGCAGTGCGCTGAGATTGCGCCATTGCACTCCAG

Expression



Full and truncated open reading frames discovered in TCONS_00067572

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.