Detailed information on ENST00000476231

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000467462 inter-alpha-trypsin inhibitor heavy chain family, member 4 processed transcript ENST00000476231 515 302 noncoding Trans
ENST00000553936 gephyrin nonsense mediated decay ENST00000476231 515 291 CDS_UTR Trans
TCONS_00053074 chromosome 12 open reading frame 29 novel protein coding ENST00000476231 572 304 UTR3 Trans
TCONS_00104871 hepatic leukemia factor novel protein coding ENST00000476231 526 303 UTR3 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000476231 558 301 UTR5 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000476231 528 292 UTR3 Trans
TCONS_00184374 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000476231 528 292 UTR3 Trans
TCONS_00204910 erythrocyte membrane protein band 4.1 like 4A novel protein coding ENST00000476231 508 303 UTR3 Trans

Sequence

>TCONS_00204910 (1961 nt)
CTTGTTGCCGGAAGTGGGAAGAGAGAAAGGTTGTGATGGCGGCTATAGCTGCATCCGAGGTGCTGGTGGACAGCGCGGAGGAGGGGTCCCTCGCTGCGGC
GGCGGAGCTGGCCGCTCAGAAGCGCGAACAGAGACTGCGCAAATTCCGGGAGCTGCACCTGATGCGGGTGAGTAGTCTTGGAGGCCGGCTTAGATCCGTC
ATCTGGCCAAGCCTGTGCGCTTTTGTAGAGGGGACGAGGAAGCCACACCACTGCGTCTGACAGACCAACAGAGCAGGATCATCTGAGAGGAAAGCTCTGT
TCGGTGGTACTCAACCCTGGCAGCACATTGGGATCATTCTGAGAACATTTGAAAATATAACTGTTCACTCCAGCCCCTCTCCCACCCACATCCAATTTAA
TGTATCTGGGTTAGGTTTGGGAGTCTCCATTACTAACAACCTCCCTGCTCCGTGATTCCAACAAATTCTTCATTTTACCTAGGGAAATATGTAGAGCTAG
AGACAGGAAGAAACTTGTCTAGTGTCAGTAAGAGACCTGGTTCACTTTAAAAAATAATAATCTTCTGTCAGAATCTGTTTGAGTGAAAAGAAAATAATCA
TCTGTTTTTGGGACTTCTGGGGGAAAAGAATAAAAAGAAAATAAAAAAAATGGCAAACTTTTGAAAGTCTACAGTGTGGTAGTTCAGCCAGTTGATAGGG
AATCTGATGTTTAAGTGCCCTGGAGGTGCAGAGGAGGAGAGAGGAATGCAGTTTGTGGGTCTCCAGGGGGTGCCTCATGTAGTAGGTGACACCTAAACTA
CTGTTTGAAAGCCAGACAACTAAAGGAGTTAGAGAAAGAGATATCCAAGCAAAGGGAACAAATTCAAAGAAAGAGAATTTGTATTAGGGATAAGAGTCCA
GCAAATAGCTTGCTGCAGTTGGAGCAGAGAAAGAGAAAAGCAGCCCCTGTTTCACCATGGAGTGACCTGACAGCTAGGCCATGGTTTCACAAAATCCCAA
AATCACTCTGACTGTTGTAGTGAGACAAAACAAAGAAGACTTTTCAAATTACAAGAATGACCACATATTTCTTTCTTCTGACTAACACCAGTGACTGTTA
TTAACAAATACAGCATTAGTCTCACTCCGTTACTTCTGCCTCCTATATAAAAATGTAAGATACTGGGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGC
ACTTTGGGAGGCCGAGGAGGGCGGATCACAAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATAGAAAAAATTA
GCCGGGCGTGCTGGCGGGCTACACGGGAGGCTGAGGCAGGAGAATGGCATGAGCCCGAGAGTCGGAGCTTACAGTGAGTCGAGATCACACCACTGCACTC
CAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAATCTAAGATACCTAATTGTAGAAAGCCCCTGCTTTCTGACAGTACCCAAT
CCACATCCTTAACCCTCCCCTCAGTCACCTGATACAAACCCAAATCCTGGAACAAGCCCTTCCTAACACCCTGTCACTCAAATGCCCACGGTTCCCCGTG
GTTTGCTCTCTTCTGTGCAACAGACTCAACTTTGTTGACCGTAGGTATGTTCTTGGCGTCTTTAATTGCAGGGCTTTTCCAGGGCCAAGAATATACTAGG
GATGGTAGTTGGGAGGAGTATCTCTCTTTGCCGAGGGAAAGTTAATCTAATAAACAATTAAAAAGACATGCTTAAATATTTAGAGTGATTGTGTAAGGAA
CACATGTCTGGAAATTAGGAGGCGGGGCTTCCTGGACAAACTGCCACCAGCTTATGACCTAAGGAATGTCTAACTCAAGTTTTCCTTAAGACGATACACT
CATTTTGCTTTATGCAATTAAGTTTATTTAAAAATAGACTCTTCTCCCTGCTACCCCAGCTC

Expression



Full and truncated open reading frames discovered in TCONS_00204910

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.