Detailed information on ENST00000477629

lncRNA-RNA interactions

Number of interactions: 11

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000397755 zinc finger family member 788 processed transcript ENST00000477629 510 268 noncoding Trans
ENST00000432564 hydroxycarboxylic acid receptor 1 protein coding ENST00000477629 608 277 UTR3 Trans
ENST00000553936 gephyrin nonsense mediated decay ENST00000477629 503 284 CDS_UTR Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay ENST00000477629 550 282 UTR3 Trans
TCONS_00107851 transient receptor potential cation chan... novel protein coding ENST00000477629 620 278 UTR5 Trans
TCONS_00107864 transient receptor potential cation chan... novel protein coding ENST00000477629 620 278 UTR3 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000477629 606 282 UTR3 Trans
TCONS_00148387 reticulon 4 novel protein coding ENST00000477629 609 279 UTR3 Trans
TCONS_00148389 reticulon 4 novel protein coding ENST00000477629 609 279 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000477629 530 287 UTR3 Trans
TCONS_00230128 solute carrier family 26 (anion exchange... novel protein coding ENST00000477629 628 262 UTR3 Trans

Sequence

>ENST00000477629 (2058 nt)
TGTGGAAATGAAGCATCTCTTTCTGTTTTCTCTTTGAGATGGTTTGAGTTAGATTGTGTCTCTTCCAAGCTTGCCACACCCCAGTGCCTCCAGTCATCTG<br />CTTTCTTGAAGGATGGCCACGCTGGTGAATTCTAGACAAATTCTAACCCGGGGAGAGGGCTGGAGAATTTCTGGTCCTGGTTGGGAGATACTCCCTGTTA<br />AACCTTCGGATATGCTGACCTAGCTGAGGTAGCCAGGGGCTATTTAAAAATTCAAAATCTCAGATCTGGCTGTGGATAAACCCCCAAGGTGGTACGTGCA<br />GTACTTGGAGGCGTGAGGGCAGAAGGTCCTCCCCAGCAGTTTGTACGGGACACATCATCTATGGGATATTAGTAAATATCCTTAAGGAAAGGCTTCTGTG<br />GTCAAAACCAGGTTCAGCAGGTTATTTCACTATGGGGCTTCTCAGGACGCTTAACCTACTCATCCCCCTCTGGGCTTTGCAAACGAGGCCGCCATTGCTT<br />TCTTTCTGCTATGTAGAAATAGATTGAGGCGTAAGGGTCGGATGTCCTTTCTCCATTCATCAGGCTCCCTCTTCCTGAGGAGCTGCTGTCAGAACAGCCT<br />GGGGCTGCTGTGTTGCAGGTTATGGTGGCATATCCTTGGCGGTGGAAGGCCCCAGCAAAGTGGACATCCAGACGGAGGACCTGGAAGATGGCACCTGCAA<br />AGTCTCCTACTTCCCTACCGTGCCTGGGGTTTATATCGTCTCCACCAAATTCGCTGACGAGCACGTGCCTGGGAGCCCATTTACCGTGAAGATCAGTGGG<br />GAGGGAAGAGTCAAAGAGAGCATCACCCGCACCAGTCGGGCCCCGTCCGTGGCCACTGTCGGGAGCATTTGTGACCTGAACCTGAAAATCCCAGGTGGGC<br />GTCGGGGACTAGTAGGGTGGGGAAGCCTTGGCTCCAGCCTTCAGGGCAGTGGGTGCCTTTGGGAACCAAGTTTAGGCATGGCCCAGAACACAGTATCCAA<br />GTCGGCTGTGCTGACCTTTTCATTTCACTTCATTTCATTATGTTCTTCTATGTTTATTTTCACAGAGTCTCATCCAAGAAAAACAAATGTTTACCTTGCT<br />ACCTTTTTCCTCTTCCAAATAAAAATAGCTTTATTGTGTCACATGGGGGAAACGTAGATATGCTTTTAGATTTTTAGATTAACTATCTGTCAAATAGAAT<br />CATGTCAGTGAAAGAACTGGCCCTGCCGATGCCAGGGTCTGGAAGTATTTAAGAGGTGGCAGCCCAGCGGCATCCTTCTAGTATTTCTCTTTCATTCCTG<br />AAATTAGAACGAGGGCTGTGCTGCAGAACTCGCTGGGCCACATCTAGCCCTTTGGTGGTGAATTGTTCTTCTTGGGCCCCGATTAGCCAGTCAACAGGTC<br />ACACAGTCTGTCTGAAATGTGTTCCAAGTTCTTTCTATAAAGAATCCTTCCAGAGGGAAGCCACTGTGAGTGAAAATTTTGAGGCTCCTCTGCCCAGAAG<br />TTGGCATGTCCTGTGGAATTGCACAAATTCTACAGAGAAGGGAAATCTAAATCGTCTTCAGATGGAGCTTGTGTTGCGAGCTCTGGAGAGGGGGTTGTCT<br />TTCTACACTGCATCTCCCATCCTTCCTAACGAGTCACGGAGCTGTCGACTCCGCCTTCTTGGCTTTAGTTAACAGGTTCTTCTTGTGTAGTCACATCAAC<br />GTCGGGTCACATGGGAATGTGGTAAAGCCTCATTACTGTAGAGTTCAGACATGATCACTTAAAAAGAGCTTTATTGGGCCGGGCGCGGTGGCTTACTCCT<br />ATAATCCCAGCACTTTGGGGGGCCGAGGCAGGCAGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCTAACATGGCAAAACCCTATCTCTTCTAAAA<br />ATACAAAAATAAGCAGGGCGTGGTGGCGGGCACCTGTAATCCCACCTACTCAGGAGGCTGAGGCACAAGAATTGCGTAAACCTGGGAGGTGGAGGTTGCA<br />GTGAGCTGAAATTGCACCGCTGCACTCCAGCCTGGGCAACAAAGTGAGACTCCTTCTC

Expression



Full and truncated open reading frames discovered in ENST00000477629

In silico ORF/peptide predictions
>peptide 1 (71 aa)
MSFLHSSGSLFLRSCCQNSLGLLCCRLWWHILGGGRPQQSGHPDGGPGRWHLQSLLLPYRAWGLYRLHQIR

>peptide 2 (59 aa)
MAQNTVSKSAVLTFSFHFISLCSSMFIFTESHPRKTNVYLATFFLFQIKIALLCHMGET

>peptide 3 (55 aa)
MVAYPWRWKAPAKWTSRRRTWKMAPAKSPTSLPCLGFISSPPNSLTSTCLGAHLP


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT072590 (Evalue: 2.0E-71)

Best hit to Swiss-Prot:
sp|O75369|FLNB_HUMAN (Evalue: 4.0E-48)