Detailed information on ENST00000477629

lncRNA-RNA interactions

Number of interactions: 11

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000397755 zinc finger family member 788 processed transcript ENST00000477629 510 268 noncoding Trans
ENST00000432564 hydroxycarboxylic acid receptor 1 protein coding ENST00000477629 608 277 UTR3 Trans
ENST00000553936 gephyrin nonsense mediated decay ENST00000477629 503 284 CDS_UTR Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay ENST00000477629 550 282 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000477629 620 278 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000477629 620 278 UTR3 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000477629 606 282 UTR3 Trans
TCONS_00148387 reticulon 4 novel protein coding ENST00000477629 609 279 UTR3 Trans
TCONS_00148389 reticulon 4 novel protein coding ENST00000477629 609 279 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding ENST00000477629 530 287 UTR3 Trans
TCONS_00230128 solute carrier family 26 (anion exchanger), member 5 novel protein coding ENST00000477629 628 262 UTR3 Trans

Sequence

>TCONS_00230128 (2057 nt)
TGTGGAAATGAAGCATCTCTTTCTGTTTTCTCTTTGAGATGGTTTGAGTTAGATTGTGTCTCTTCCAAGCTTGCCACACCCCAGTGCCTCCAGTCATCTG
CTTTCTTGAAGGATGGCCACGCTGGTGAATTCTAGACAAATTCTAACCCGGGGAGAGGGCTGGAGAATTTCTGGTCCTGGTTGGGAGATACTCCCTGTTA
AACCTTCGGATATGCTGACCTAGCTGAGGTAGCCAGGGGCTATTTAAAAATTCAAAATCTCAGATCTGGCTGTGGATAAACCCCCAAGGTGGTACGTGCA
GTACTTGGAGGCGTGAGGGCAGAAGGTCCTCCCCAGCAGTTTGTACGGGACACATCATCTATGGGATATTAGTAAATATCCTTAAGGAAAGGCTTCTGTG
GTCAAAACCAGGTTCAGCAGGTTATTTCACTATGGGGCTTCTCAGGACGCTTAACCTACTCATCCCCCTCTGGGCTTTGCAAACGAGGCCGCCATTGCTT
TCTTTCTGCTATGTAGAAATAGATTGAGGCGTAAGGGTCGGATGTCCTTTCTCCATTCATCAGGCTCCCTCTTCCTGAGGAGCTGCTGTCAGAACAGCCT
GGGGCTGCTGTGTTGCAGGTTATGGTGGCATATCCTTGGCGGTGGAAGGCCCCAGCAAAGTGGACATCCAGACGGAGGACCTGGAAGATGGCACCTGCAA
AGTCTCCTACTTCCCTACCGTGCCTGGGGTTTATATCGTCTCCACCAAATTCGCTGACGAGCACGTGCCTGGGAGCCCATTTACCGTGAAGATCAGTGGG
GAGGGAAGAGTCAAAGAGAGCATCACCCGCACCAGTCGGGCCCCGTCCGTGGCCACTGTCGGGAGCATTTGTGACCTGAACCTGAAAATCCCAGGTGGGC
GTCGGGGACTAGTAGGGTGGGGAAGCCTTGGCTCCAGCCTTCAGGGCAGTGGGTGCCTTTGGGAACCAAGTTTAGGCATGGCCCAGAACACAGTATCCAA
GTCGGCTGTGCTGACCTTTTCATTTCACTTCATTTCATTATGTTCTTCTATGTTTATTTTCACAGAGTCTCATCCAAGAAAAACAAATGTTTACCTTGCT
ACCTTTTTCCTCTTCCAAATAAAAATAGCTTTATTGTGTCACATGGGGGAAACGTAGATATGCTTTTAGATTTTTAGATTAACTATCTGTCAAATAGAAT
CATGTCAGTGAAAGAACTGGCCCTGCCGATGCCAGGGTCTGGAAGTATTTAAGAGGTGGCAGCCCAGCGGCATCCTTCTAGTATTTCTCTTTCATTCCTG
AAATTAGAACGAGGGCTGTGCTGCAGAACTCGCTGGGCCACATCTAGCCCTTTGGTGGTGAATTGTTCTTCTTGGGCCCCGATTAGCCAGTCAACAGGTC
ACACAGTCTGTCTGAAATGTGTTCCAAGTTCTTTCTATAAAGAATCCTTCCAGAGGGAAGCCACTGTGAGTGAAAATTTTGAGGCTCCTCTGCCCAGAAG
TTGGCATGTCCTGTGGAATTGCACAAATTCTACAGAGAAGGGAAATCTAAATCGTCTTCAGATGGAGCTTGTGTTGCGAGCTCTGGAGAGGGGGTTGTCT
TTCTACACTGCATCTCCCATCCTTCCTAACGAGTCACGGAGCTGTCGACTCCGCCTTCTTGGCTTTAGTTAACAGGTTCTTCTTGTGTAGTCACATCAAC
GTCGGGTCACATGGGAATGTGGTAAAGCCTCATTACTGTAGAGTTCAGACATGATCACTTAAAAAGAGCTTTATTGGGCCGGGCGCGGTGGCTTACTCCT
ATAATCCCAGCACTTTGGGGGGCCGAGGCAGGCAGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCTAACATGGCAAAACCCTATCTCTTCTAAAA
ATACAAAAATAAGCAGGGCGTGGTGGCGGGCACCTGTAATCCCACCTACTCAGGAGGCTGAGGCACAAGAATTGCGTAAACCTGGGAGGTGGAGGTTGCA
GTGAGCTGAAATTGCACCGCTGCACTCCAGCCTGGGCAACAAAGTGAGACTCCTTCTC

Expression



Full and truncated open reading frames discovered in TCONS_00230128

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.