Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000424496 | sense_intronic | sense intronic | ENST00000477648 | 621 | 290 | noncoding | Trans | |
ENST00000448214 | antisense | antisense | ENST00000477648 | 622 | 290 | noncoding | Trans | |
ENST00000463496 | aryl hydrocarbon receptor | nonsense mediated decay | ENST00000477648 | 565 | 293 | UTR3 | Trans | |
ENST00000612932 | suppressor of cytokine signaling 7 | protein coding | ENST00000477648 | 572 | 295 | UTR3 | Trans | |
ENST00000621141 | G protein-coupled receptor 1 | protein coding | ENST00000477648 | 516 | 257 | UTR3 | Trans | |
TCONS_00001594 | lincRNA | novel protein coding | ENST00000477648 | 618 | 295 | UTR5 | Trans | |
TCONS_00001821 | low density lipoprotein receptor adaptor protein 1 | novel protein coding | ENST00000477648 | 608 | 288 | UTR3 | Trans | |
TCONS_00001823 | low density lipoprotein receptor adaptor protein 1 | novel protein coding | ENST00000477648 | 608 | 288 | UTR3 | Trans | |
TCONS_00030165 | antisense | novel protein coding | ENST00000477648 | 622 | 290 | UTR5 | Trans | |
TCONS_00030588 | cytoplasmic polyadenylation element binding protein 3 | novel protein coding | ENST00000477648 | 606 | 293 | UTR3 | Trans | |
TCONS_00030591 | cytoplasmic polyadenylation element binding protein 3 | novel protein coding | ENST00000477648 | 606 | 290 | UTR3 | Trans | |
TCONS_00065859 | ubiquitin specific peptidase 12 | novel protein coding | ENST00000477648 | 615 | 292 | UTR3 | Trans | |
TCONS_00095053 | epithelial membrane protein 2 | novel protein coding | ENST00000477648 | 555 | 291 | UTR3 | Trans | |
TCONS_00095053 | epithelial membrane protein 2 | novel protein coding | ENST00000477648 | 501 | 293 | UTR3 | Trans | |
TCONS_00102928 | suppressor of cytokine signaling 7 | novel protein coding | ENST00000477648 | 572 | 295 | UTR3 | Trans | |
TCONS_00102930 | suppressor of cytokine signaling 7 | novel protein coding | ENST00000477648 | 572 | 295 | UTR3 | Trans | |
TCONS_00102933 | suppressor of cytokine signaling 7 | novel protein coding | ENST00000477648 | 572 | 295 | UTR3 | Trans | |
TCONS_00107864 | transient receptor potential cation channel, subfamily V, member 1 | novel protein coding | ENST00000477648 | 602 | 288 | UTR3 | Trans | |
TCONS_00107867 | transient receptor potential cation channel, subfamily V, member 1 | novel protein coding | ENST00000477648 | 602 | 288 | UTR3 | Trans | |
TCONS_00116668 | desmoglein 3 | novel protein coding | ENST00000477648 | 585 | 252 | UTR3 | Trans | |
TCONS_00135631 | zinc finger protein 841 | novel protein coding | ENST00000477648 | 633 | 295 | UTR3 | Trans | |
TCONS_00184373 | neutral cholesterol ester hydrolase 1 | novel protein coding | ENST00000477648 | 634 | 288 | UTR3 | Trans | |
TCONS_00192322 | tec protein tyrosine kinase | novel protein coding | ENST00000477648 | 624 | 296 | UTR5 | Trans | |
TCONS_00192331 | tec protein tyrosine kinase | novel protein coding | ENST00000477648 | 610 | 295 | UTR3 | Trans | |
TCONS_00203985 | family with sequence similarity 169, member A | novel protein coding | ENST00000477648 | 612 | 294 | UTR5 | Trans | |
TCONS_00205414 | prolyl 4-hydroxylase, alpha polypeptide II | novel protein coding | ENST00000477648 | 618 | 300 | UTR3 | Trans | |
TCONS_00210637 | polymerase (DNA directed), eta | novel protein coding | ENST00000477648 | 527 | 291 | UTR3 | Trans | |
TCONS_00210928 | leucine rich repeat containing 1 | novel protein coding | ENST00000477648 | 614 | 290 | UTR3 | Trans | |
TCONS_00235281 | NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 | novel protein coding | ENST00000477648 | 641 | 290 | UTR5 | Trans | |
TCONS_00235393 | processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) | novel protein coding | ENST00000477648 | 647 | 288 | UTR5 | Trans | |
TCONS_00243475 | osteoclast stimulating factor 1 | novel protein coding | ENST00000477648 | 610 | 285 | UTR3 | Trans | |
TCONS_00243477 | osteoclast stimulating factor 1 | novel protein coding | ENST00000477648 | 601 | 289 | UTR5 | Trans | |
TCONS_00243482 | osteoclast stimulating factor 1 | novel protein coding | ENST00000477648 | 601 | 289 | UTR5 | Trans | |
TCONS_00243482 | osteoclast stimulating factor 1 | novel protein coding | ENST00000477648 | 610 | 285 | UTR5 | Trans | |
TCONS_00247297 | family with sequence similarity 166, member B | novel protein coding | ENST00000477648 | 664 | 291 | UTR5 | Trans | |
TCONS_00252827 | discs, large homolog 3 (Drosophila) | novel protein coding | ENST00000477648 | 638 | 291 | UTR5 | Trans |
>TCONS_00252827 (4456 nt)
ATGTGCCTTTTTGGTCTTTTTTGAACTTTTAAATGACATGAAAATACATATACTGAATGTATAAAAAAACATTTATGTAGTTTAAAAGGTAATTATAAAC
TGAACCTCCATTTAACCAACCCCAGGTTCGGATATAGAATATCATCAGCACATATACTGTTAATGTACCCTGCACAGTTAAATGTCTTCTACGTACCCCT
CTGCCCCAGATCACTTGGTGTTGATCAACTTCATTACCTTAAAAAAAAAAATGGTTTTATGTGCATTTGTGAACAGTATCAGGTTTGTTTTGCATATTTG
TGGATTTTTTGTAATGGGAATTATACTGCATGTATTTTTTGTGATTTGATTCTCTCAGCATTGCTTTTGAGATTGATTGAAGTTGACTCATTCAGCTGTA
TTTCATTCGTTTTTATTTCTCCATACCAGGGTTCAGCAAAGTTCTTTCTATAAAGGGTTAGTTAGTAAATATTTTAGGTTTTGCAGACCATTAGGTCTCT
GTCATGGCTACTCAGCACTACCACGGTAGTGTGAAAGCATCAATAGATAATATGTAAATAAATGAGTATAATTGTGTTCCAGTAAAACTATTTACAAATA
CTTACCATGGGCTGGATTTGGCCTGTGGCCATAGTTTGCTCAGTCTGCTCTATAGTATTCTGTTACATGCATGTACCATAACTTAGCCATTTTATTGTCA
GCATTCAAATTTTTTCCAGTAAGAGTATGTGCATAGAAAAAAATTGTGTATTTCACTTTAAATATACTATAAAATTTATGCATAACATAAATTCGACGAT
AGTTTTCTTATACATCATCAAACATTAGGTCTGACAGGTCAAGAAAAGGCTTTATAAGTAGCAAGGAACTTCTCAGGGTTCTAGAGATTTTATAAGATCC
CCACTTAATGAAATGTGTGTGTATTGCTATTTGTTATTTCCTGTCACTTGAAGTATGGCCCCTAAAACAACTTCATGCAAAGTTTCAAAGATCTATTGTA
GTTTCTTATAGAGAAACATCCTTTGACTTCATGTGGCTGGAATGAACAAAATTAAGTGTGTGTAATACTTGTTTGCCTGTTTAAAATGCCCAGTTGTAGG
GGTATTCTATACTGGGTACTGGAAAGGTTAACATTACTAGGATATTAGGCACAGTTGGCAGCCGAAGTCTTAGGTACCTAAAATTCCCATTTGGGCTATT
TCTTCCCCACTGGAGAAGGTGTTTATAAGATTACAAAATGATGAAAATGCTAATCAAATTACTGGGGAGCCTTTGATTTCACAAGTGCTGGCCAGAAAGT
TAGGTTTGACCGAGTTGAGTTGTTTAGTACTGTCTGCTGTGCCTTGAAGATACTGTTCTATTGTCTCCTTGCCTCAGTGTTAACTAATGAAAAAATCTGC
TGTTAGTCTGAGCCCTCTTAGTTTGTAGGTAGTAATCTTACAGGTAGTAATCTATATTTTTACTGTTCTCTCTTTATCTTCAGTGTGTTGCAGATCAGGA
TGTGTCCTAGTGTAGATTTGTTATTTATCCTGCCCTAGACATAGTGTGCTTCTGTAATGTGAAGATTCAGTTTTTTTTCTTCAAGTCTGGAAAGTTATTA
TTAATTTTTAACCATCTTCCCCCATTGTTTCTATTTTCTTCTAAAAACTCCTTTTAAACATAGGGAGCTTTTTATTCTGTCTTCGTCTCTTAAAAATCTT
TCAATTTGCTAATTCTTTTACTTAATCCTCCTACTGAGATTTTATTTCATCAACTTTTGTTTTCTTTTGGATTTGTTTCTATTTTGGATTTTTATTTGGT
ATTTTGTCATTTTCGCGTGTTCTTGGTTTATTGGTGTTTCTTTAAAGTTCTTGTTAGTTCCATTAGCTCCTTTTTCCTGCGGTGTCGGCATTCTCCCTTA
TTTTAGGGAGCAAGTTGAACAGACTTGTATATTTTGGGCTGCATACCTTTTCCCTAAGTGTGTCTTTTGTGGGAGTTCTGTGGAGGTTTATAGAGACTTC
CCTGTAGGATAGTTTGACATTTGCATTTTCCTGGCTTCCCATTCTGTGCAAGGAGCATAGTTCAAACTCCCTGCCTTCCATACCTGGGTTCTGAAGCCTC
AGCTTCCAGTACTGTTGACTGTTGAAAATCCTTGCCCTAAAATCCCACATACAGTTTTTATGACTGTTGGATATCTTTATATGAATTTCATTATAGTTTC
TTTCACCTAGAGGTTTTACCCATCTGGCCTTGAGCTTGGCTGTCTTTTTTTTTTAAGGTCTGTGGTTATTTGAAATCCACTCAAATTAAGAAAAGTAGAA
AATGAAAATATTTGATTATTACAGGAGTAACTTGTAAAACCCAAGGGCTAGGAATTAGAAATTTAGCAAGAGACAAAGCAGCTTACTCTACGTTTCTTCT
AGTTTGTGTAGTCTGTATCTCCGTGCCTTTGCATTAGCTATGTCTGCAGTCTGGCTTTCTCTTTTCTCCTTGCACGTGACTGTCCCAGCTGGGCTCTGCA
TAAGAGTATCTATTTGGCCTAGAATGGATTCATTATTCACCATAGATGGAATTACCATATGTGCAGTCAGGGAAATTGGTTATATAGTGAAGGGGCTGCT
CCCTCTAGACCTGGAGGTAGTCAGGTTCTCTTAGAAAGATTTAGGAACTAGGAAGATTATACACTCCTGGTAAAGAAGCTGCAAAAAGGTCAGAGCCTTT
CATAGTCAGTGGACTCTAGGTCTATGTGAATATTGCACCATCTAATTAACACTTGGAGAATGTGGTTAGGCTAGCTGCAAGGTCACCTGTCTCTACCATA
AACATTTTGCTCCATAAAGATACCGAGAGAATGATGTTCTTGATTTGGCTCTTAGCCTAAATGTTAGTGAAAAACACCATGTTTATTGAAATGTGGATAG
TTTCTCTTGTTCTTAAGTTTAATTAGGGCCCACTTGTCATTTTTTGTTTTTGCAATTGCTTTTGAGGACTTAGTAATGAATTCTTAATCTATCTTGAGTT
AATTTTTTTTTTTGAGACGGAGTCTCATTCTTTTGCCAGGCTGGAATGCAGTGGTGTGATCTCGGCTCACTACAACCTCCACCTCCCGGATTCAAGCAAT
TCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTGCAGGCGCGTGCCACCATGCCTGGCTAATTTTGTATCTGTAGTAGAGACGGGGTTTCTCCATGTTGG
CCAGGATGGTCTTGATTTCTTGACTTCGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCCGAGTTAATT
TTTTGTATATGATGAAAGATAGGGATCCATTTTTATTCTTCTACAAAAGGATAGCCAATTGTCCCAGCACCATTTATTGAATAGGGAATCCTTGCCCTGT
TGCTTGTTTTTGTCACCTTAGTTGAAGATGAGATAGTTGTAGGTATGTGGCTTTATTTCTGGGTTCTCTTTTCTGTTCCATTGGTTTATCTGTCTGTTGT
TCTCTATCATTACCATGCTGTTTTGGCTACTGTAGCCTTGTAGTGTACTGTGAAGTCAGGTTGTTTTTGCTTAGGATTGCTTTGGCCATTCTGGCTTTTT
TGGTTCCATGTGAATTTTAGAATATTTTTTTTTAATTGTGTGAAGAATGATGTTGGTAGTTTGATAGGAATACAGTTGAATCTGTAGGTTGCTTTGAGCA
GTGTGGCCATTTTAACAATACTGATTATTCCAATTCATGAGCATGGAATGTTTTTCCATTTATCTGTGTCATCTGTGATTTCTCTCAGCAGTGTTCTGTA
GTTTTTCTTGTAGAGATCTTTCACCTCCTTGGTTAGATGTATTCCTAGGTATTTAGTGTGTGTGTGTGGCTATTGTAAGTGAGATTGCGTTCTTGATTTG
GCTCTCAGTTTAAATGTTATTGGAAAACATGTTCCTTAAAAGGACATTTCACTTTGGGGGAATATAGAAGGGGGGCTTTTCCTGTGGGCATTTGCTCACT
GACTCATTTCTGTCTCTGTTATTGTAGGGACAAGCTGTGGGGGGTCTGTGTCTCCATCCTGGCTCTCTTGCCTCGAGTCCTCAGGTTGATGCTGCAGAGC
CTGCGGGTGAACAGAGTTGGGCCTGAGGAGCTGCCTGTTGTGGGCCAGCTGCTTCGACTGCTGCTTCAGCATGCACCCCTCAGGACTCATATGTTGACCA
ATGCGATCTTGGTGCAGCAGATCATCAAGAATATCACGACATTGAAGAGTGGAAGTGTTCAGGAACAGTGGCTCACAGACTTACATTACTGCTTCAACGT
GTATATCACTGGGCATCCCCAAGGGCCCAGTGCACTGGCTACAGTGTATTGAAGAGGCCATAGTACCTCCTGTTTGAAGTTGTTTATTCACATCTATCTT
ATTTGAAGAAAAAGACTGATGTAATAGATCTTTGTCATTAAAGCTGAACTTTTAAAG
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.