Detailed information on ENST00000477648

lncRNA-RNA interactions

Number of interactions: 36

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000424496 sense_intronic sense intronic ENST00000477648 621 290 noncoding Trans
ENST00000448214 antisense antisense ENST00000477648 622 290 noncoding Trans
ENST00000463496 aryl hydrocarbon receptor nonsense mediated decay ENST00000477648 565 293 UTR3 Trans
ENST00000612932 suppressor of cytokine signaling 7 protein coding ENST00000477648 572 295 UTR3 Trans
ENST00000621141 G protein-coupled receptor 1 protein coding ENST00000477648 516 257 UTR3 Trans
TCONS_00001594 lincRNA novel protein coding ENST00000477648 618 295 UTR5 Trans
TCONS_00001821 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000477648 608 288 UTR3 Trans
TCONS_00001823 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000477648 608 288 UTR3 Trans
TCONS_00030165 antisense novel protein coding ENST00000477648 622 290 UTR5 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000477648 606 293 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000477648 606 290 UTR3 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding ENST00000477648 615 292 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000477648 555 291 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000477648 501 293 UTR3 Trans
TCONS_00102928 suppressor of cytokine signaling 7 novel protein coding ENST00000477648 572 295 UTR3 Trans
TCONS_00102930 suppressor of cytokine signaling 7 novel protein coding ENST00000477648 572 295 UTR3 Trans
TCONS_00102933 suppressor of cytokine signaling 7 novel protein coding ENST00000477648 572 295 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000477648 602 288 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000477648 602 288 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000477648 585 252 UTR3 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding ENST00000477648 633 295 UTR3 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000477648 634 288 UTR3 Trans
TCONS_00192322 tec protein tyrosine kinase novel protein coding ENST00000477648 624 296 UTR5 Trans
TCONS_00192331 tec protein tyrosine kinase novel protein coding ENST00000477648 610 295 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000477648 612 294 UTR5 Trans
TCONS_00205414 prolyl 4-hydroxylase, alpha polypeptide II novel protein coding ENST00000477648 618 300 UTR3 Trans
TCONS_00210637 polymerase (DNA directed), eta novel protein coding ENST00000477648 527 291 UTR3 Trans
TCONS_00210928 leucine rich repeat containing 1 novel protein coding ENST00000477648 614 290 UTR3 Trans
TCONS_00235281 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 novel protein coding ENST00000477648 641 290 UTR5 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000477648 647 288 UTR5 Trans
TCONS_00243475 osteoclast stimulating factor 1 novel protein coding ENST00000477648 610 285 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000477648 601 289 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000477648 601 289 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000477648 610 285 UTR5 Trans
TCONS_00247297 family with sequence similarity 166, member B novel protein coding ENST00000477648 664 291 UTR5 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000477648 638 291 UTR5 Trans

Sequence

>TCONS_00252827 (4456 nt)
ATGTGCCTTTTTGGTCTTTTTTGAACTTTTAAATGACATGAAAATACATATACTGAATGTATAAAAAAACATTTATGTAGTTTAAAAGGTAATTATAAAC
TGAACCTCCATTTAACCAACCCCAGGTTCGGATATAGAATATCATCAGCACATATACTGTTAATGTACCCTGCACAGTTAAATGTCTTCTACGTACCCCT
CTGCCCCAGATCACTTGGTGTTGATCAACTTCATTACCTTAAAAAAAAAAATGGTTTTATGTGCATTTGTGAACAGTATCAGGTTTGTTTTGCATATTTG
TGGATTTTTTGTAATGGGAATTATACTGCATGTATTTTTTGTGATTTGATTCTCTCAGCATTGCTTTTGAGATTGATTGAAGTTGACTCATTCAGCTGTA
TTTCATTCGTTTTTATTTCTCCATACCAGGGTTCAGCAAAGTTCTTTCTATAAAGGGTTAGTTAGTAAATATTTTAGGTTTTGCAGACCATTAGGTCTCT
GTCATGGCTACTCAGCACTACCACGGTAGTGTGAAAGCATCAATAGATAATATGTAAATAAATGAGTATAATTGTGTTCCAGTAAAACTATTTACAAATA
CTTACCATGGGCTGGATTTGGCCTGTGGCCATAGTTTGCTCAGTCTGCTCTATAGTATTCTGTTACATGCATGTACCATAACTTAGCCATTTTATTGTCA
GCATTCAAATTTTTTCCAGTAAGAGTATGTGCATAGAAAAAAATTGTGTATTTCACTTTAAATATACTATAAAATTTATGCATAACATAAATTCGACGAT
AGTTTTCTTATACATCATCAAACATTAGGTCTGACAGGTCAAGAAAAGGCTTTATAAGTAGCAAGGAACTTCTCAGGGTTCTAGAGATTTTATAAGATCC
CCACTTAATGAAATGTGTGTGTATTGCTATTTGTTATTTCCTGTCACTTGAAGTATGGCCCCTAAAACAACTTCATGCAAAGTTTCAAAGATCTATTGTA
GTTTCTTATAGAGAAACATCCTTTGACTTCATGTGGCTGGAATGAACAAAATTAAGTGTGTGTAATACTTGTTTGCCTGTTTAAAATGCCCAGTTGTAGG
GGTATTCTATACTGGGTACTGGAAAGGTTAACATTACTAGGATATTAGGCACAGTTGGCAGCCGAAGTCTTAGGTACCTAAAATTCCCATTTGGGCTATT
TCTTCCCCACTGGAGAAGGTGTTTATAAGATTACAAAATGATGAAAATGCTAATCAAATTACTGGGGAGCCTTTGATTTCACAAGTGCTGGCCAGAAAGT
TAGGTTTGACCGAGTTGAGTTGTTTAGTACTGTCTGCTGTGCCTTGAAGATACTGTTCTATTGTCTCCTTGCCTCAGTGTTAACTAATGAAAAAATCTGC
TGTTAGTCTGAGCCCTCTTAGTTTGTAGGTAGTAATCTTACAGGTAGTAATCTATATTTTTACTGTTCTCTCTTTATCTTCAGTGTGTTGCAGATCAGGA
TGTGTCCTAGTGTAGATTTGTTATTTATCCTGCCCTAGACATAGTGTGCTTCTGTAATGTGAAGATTCAGTTTTTTTTCTTCAAGTCTGGAAAGTTATTA
TTAATTTTTAACCATCTTCCCCCATTGTTTCTATTTTCTTCTAAAAACTCCTTTTAAACATAGGGAGCTTTTTATTCTGTCTTCGTCTCTTAAAAATCTT
TCAATTTGCTAATTCTTTTACTTAATCCTCCTACTGAGATTTTATTTCATCAACTTTTGTTTTCTTTTGGATTTGTTTCTATTTTGGATTTTTATTTGGT
ATTTTGTCATTTTCGCGTGTTCTTGGTTTATTGGTGTTTCTTTAAAGTTCTTGTTAGTTCCATTAGCTCCTTTTTCCTGCGGTGTCGGCATTCTCCCTTA
TTTTAGGGAGCAAGTTGAACAGACTTGTATATTTTGGGCTGCATACCTTTTCCCTAAGTGTGTCTTTTGTGGGAGTTCTGTGGAGGTTTATAGAGACTTC
CCTGTAGGATAGTTTGACATTTGCATTTTCCTGGCTTCCCATTCTGTGCAAGGAGCATAGTTCAAACTCCCTGCCTTCCATACCTGGGTTCTGAAGCCTC
AGCTTCCAGTACTGTTGACTGTTGAAAATCCTTGCCCTAAAATCCCACATACAGTTTTTATGACTGTTGGATATCTTTATATGAATTTCATTATAGTTTC
TTTCACCTAGAGGTTTTACCCATCTGGCCTTGAGCTTGGCTGTCTTTTTTTTTTAAGGTCTGTGGTTATTTGAAATCCACTCAAATTAAGAAAAGTAGAA
AATGAAAATATTTGATTATTACAGGAGTAACTTGTAAAACCCAAGGGCTAGGAATTAGAAATTTAGCAAGAGACAAAGCAGCTTACTCTACGTTTCTTCT
AGTTTGTGTAGTCTGTATCTCCGTGCCTTTGCATTAGCTATGTCTGCAGTCTGGCTTTCTCTTTTCTCCTTGCACGTGACTGTCCCAGCTGGGCTCTGCA
TAAGAGTATCTATTTGGCCTAGAATGGATTCATTATTCACCATAGATGGAATTACCATATGTGCAGTCAGGGAAATTGGTTATATAGTGAAGGGGCTGCT
CCCTCTAGACCTGGAGGTAGTCAGGTTCTCTTAGAAAGATTTAGGAACTAGGAAGATTATACACTCCTGGTAAAGAAGCTGCAAAAAGGTCAGAGCCTTT
CATAGTCAGTGGACTCTAGGTCTATGTGAATATTGCACCATCTAATTAACACTTGGAGAATGTGGTTAGGCTAGCTGCAAGGTCACCTGTCTCTACCATA
AACATTTTGCTCCATAAAGATACCGAGAGAATGATGTTCTTGATTTGGCTCTTAGCCTAAATGTTAGTGAAAAACACCATGTTTATTGAAATGTGGATAG
TTTCTCTTGTTCTTAAGTTTAATTAGGGCCCACTTGTCATTTTTTGTTTTTGCAATTGCTTTTGAGGACTTAGTAATGAATTCTTAATCTATCTTGAGTT
AATTTTTTTTTTTGAGACGGAGTCTCATTCTTTTGCCAGGCTGGAATGCAGTGGTGTGATCTCGGCTCACTACAACCTCCACCTCCCGGATTCAAGCAAT
TCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTGCAGGCGCGTGCCACCATGCCTGGCTAATTTTGTATCTGTAGTAGAGACGGGGTTTCTCCATGTTGG
CCAGGATGGTCTTGATTTCTTGACTTCGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCCGAGTTAATT
TTTTGTATATGATGAAAGATAGGGATCCATTTTTATTCTTCTACAAAAGGATAGCCAATTGTCCCAGCACCATTTATTGAATAGGGAATCCTTGCCCTGT
TGCTTGTTTTTGTCACCTTAGTTGAAGATGAGATAGTTGTAGGTATGTGGCTTTATTTCTGGGTTCTCTTTTCTGTTCCATTGGTTTATCTGTCTGTTGT
TCTCTATCATTACCATGCTGTTTTGGCTACTGTAGCCTTGTAGTGTACTGTGAAGTCAGGTTGTTTTTGCTTAGGATTGCTTTGGCCATTCTGGCTTTTT
TGGTTCCATGTGAATTTTAGAATATTTTTTTTTAATTGTGTGAAGAATGATGTTGGTAGTTTGATAGGAATACAGTTGAATCTGTAGGTTGCTTTGAGCA
GTGTGGCCATTTTAACAATACTGATTATTCCAATTCATGAGCATGGAATGTTTTTCCATTTATCTGTGTCATCTGTGATTTCTCTCAGCAGTGTTCTGTA
GTTTTTCTTGTAGAGATCTTTCACCTCCTTGGTTAGATGTATTCCTAGGTATTTAGTGTGTGTGTGTGGCTATTGTAAGTGAGATTGCGTTCTTGATTTG
GCTCTCAGTTTAAATGTTATTGGAAAACATGTTCCTTAAAAGGACATTTCACTTTGGGGGAATATAGAAGGGGGGCTTTTCCTGTGGGCATTTGCTCACT
GACTCATTTCTGTCTCTGTTATTGTAGGGACAAGCTGTGGGGGGTCTGTGTCTCCATCCTGGCTCTCTTGCCTCGAGTCCTCAGGTTGATGCTGCAGAGC
CTGCGGGTGAACAGAGTTGGGCCTGAGGAGCTGCCTGTTGTGGGCCAGCTGCTTCGACTGCTGCTTCAGCATGCACCCCTCAGGACTCATATGTTGACCA
ATGCGATCTTGGTGCAGCAGATCATCAAGAATATCACGACATTGAAGAGTGGAAGTGTTCAGGAACAGTGGCTCACAGACTTACATTACTGCTTCAACGT
GTATATCACTGGGCATCCCCAAGGGCCCAGTGCACTGGCTACAGTGTATTGAAGAGGCCATAGTACCTCCTGTTTGAAGTTGTTTATTCACATCTATCTT
ATTTGAAGAAAAAGACTGATGTAATAGATCTTTGTCATTAAAGCTGAACTTTTAAAG

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.