Detailed information on ENST00000479145

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00189916 doublecortin-like kinase 2 novel protein coding ENST00000479145 757 351 UTR3 Trans
TCONS_00189917 doublecortin-like kinase 2 novel protein coding ENST00000479145 757 351 UTR3 Trans
TCONS_00189925 doublecortin-like kinase 2 novel protein coding ENST00000479145 757 351 UTR3 Trans

Sequence

>TCONS_00189925 (2237 nt)
ATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGACAAAATTGGAAATCATCATTCTCAGTAAACTAT
CGCAAGAACAAAAAACCAAACACTGTATATTCTCACTCATAGGTGGGAATTGAACAATGAGAACACATGGACACAGGAAGGGGAACATCACACTCTGGGG
ACTGTTGTGGGGTGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGTGCACCAGCATGGCACAAGT
ATACATATGTAACTAACCTGCACATTGTGCACATGTACCCTAAAACTTAAGAATAATAATTAATAAATTAAAAAGAGGCATTCTATTTGAGTCTTGTTAT
TACTGACTTTTCAGTTATAAGTGATAAGAATGCTGATATTTTAGCTAGTCACCCATTAGATAACATTTATTTGCTTATTATTTATATCATTGCTGGGCAT
GGTGGCTCATTGCCTGTAATCCTAGTTACTTTGGGAGGCCAAAGTGAGAGGATTGCTTGAGGCCAGGAGTTCAAGACCAGCTTCAGCAATATAGTGAGAC
CCCCATCTCAATCAATCAACCGATCTATCAGTTTTTATCACTGTGCTTATTTATATGATTGTAAAACACTTTCACATTAAAAGATAACCTCAAAAATTCA
TGGTAGCTTACCAAAAGGGGCCATATTGTTATTTATTTAGTCTTGGTAACCAAACAGTTCCAAAATTTTTACTGTTTAAGTAGAAATGAGCTGAGCTTTG
AGAGATTTTTTTGTTGTTGTTTTAAAGATTATATTTCTTTATTTCTTTTTTGTCGGGGGTGAAGATGGGGTCTAAGGGTCTCACTATATTGCCCAGGCTG
GAGTGCAGTGGCTGTTCACAGGCACAATCATAGCTTACTACATCCTTGAACTTGAACATCCTTGAGATGGGAAGGCTCAAGAGATCCTCCCCCGCTCAGC
TTCCCAAGTACCTAGGACTACAGGCCGACACCATCATGCCTGGCCATACTTCACTTACCAGTAATCATAATGAAGATCGTGTATTTAACAGATGTTAAGC
TTACCAACTGTTCAGATGTGCATGTGAATTGGGGGTAGATTGTGAAGACATTTGCAATATTCTATCTCCCTGACATTATAATTGGGAAAAATTAGGTTTA
AATAACCGTGTGATAGAAAACCTGTATCTCTGTGATAAGTTCTCTAAGAGTGGTACAAGACATTTGCAATATTCTCTCTATCTCCCTAACGATGTAATTG
GAAAAATGAGGTTTAAATAACACTGTTCTATGATAGGTTCTCTAAGAGTGCTGCCAAGTGTTATAAGAGTTCAGAATGAGACCTTTAAAGTAGAATGAAC
GGAGAAGGTTTCCTGGAGTAGAGAGAATTTGAGCCAGGCCTGGAAGCTTAGGCAGGACTTTAACAGGAAGACATGGTGAGAGAACAGCATGCCTGAGAGA
GAAAATTCATGCTTGCCAGTCTGAGATAAGCCAGTATCATCTTCTTTCAGGTGCAAGTTTTGAAACTGCTTTTGAATTTGTCTGAAAATCCAGCCATGAC
AGAAGGACTTCTCCGTGCCCAAGTGGATTCATCATTCCTTTCCCTTTATGACAGCCACGTAGCAAAGGAGATTCTTCTTCGAGTACTTACGCTATTTCAG
AATATAAAGAACTGCCTCAAAATAGAAGGCCATTTAGCTGTGCAGCCTACTTTCACTGAAGGTTCATTGTTTTTCCTGTTACATGGAGAAGAATGTGCCC
AGAAAATAAGAGCTTTAGTTGATCACCATGATGCAGAGGTGAAGGAAAAGGTTGTAACAATAATACCCAAAATCTGATTGGTCATATTTTTCCAAAGAGT
AATGCAGTCTGGATATAAACGTATTTTCTGTCTTCCTTATAAGGGGATTCTCCCAGCTGCTAAATTTAAACAGTAAATATCACATTTTGTCATTAACACA
GCTATAACTTGCCGTGGTTCTCAGATTTATTTTGGACTATTTTGATGCCAAGTGAATATAAGAGCTTGTACTGAAACCATTTATTTCTTTCTATTTTGCT
ATTTGCAAATGCTTGTTATCTTCCCTACATGAAGTGGCAGTAACCTTTTTCACATTTAAGCTACCCTTCTACCTTTTGAAGTGATTTGCAGTTACTCATC
TGAGACAGCATCAGTATTTGACTAAATCATTGTTTCAC

Expression



Full and truncated open reading frames discovered in TCONS_00189925

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.