Detailed information on ENST00000479145

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00189916 doublecortin-like kinase 2 novel protein coding ENST00000479145 757 351 UTR3 Trans
TCONS_00189917 doublecortin-like kinase 2 novel protein coding ENST00000479145 757 351 UTR3 Trans
TCONS_00189925 doublecortin-like kinase 2 novel protein coding ENST00000479145 757 351 UTR3 Trans

Sequence

>ENST00000479145 (2238 nt)
ATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGACAAAATTGGAAATCATCATTCTCAGTAAACTAT<br />CGCAAGAACAAAAAACCAAACACTGTATATTCTCACTCATAGGTGGGAATTGAACAATGAGAACACATGGACACAGGAAGGGGAACATCACACTCTGGGG<br />ACTGTTGTGGGGTGGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACGAGTTAGTGGGTGCAGTGCACCAGCATGGCACAAGT<br />ATACATATGTAACTAACCTGCACATTGTGCACATGTACCCTAAAACTTAAGAATAATAATTAATAAATTAAAAAGAGGCATTCTATTTGAGTCTTGTTAT<br />TACTGACTTTTCAGTTATAAGTGATAAGAATGCTGATATTTTAGCTAGTCACCCATTAGATAACATTTATTTGCTTATTATTTATATCATTGCTGGGCAT<br />GGTGGCTCATTGCCTGTAATCCTAGTTACTTTGGGAGGCCAAAGTGAGAGGATTGCTTGAGGCCAGGAGTTCAAGACCAGCTTCAGCAATATAGTGAGAC<br />CCCCATCTCAATCAATCAACCGATCTATCAGTTTTTATCACTGTGCTTATTTATATGATTGTAAAACACTTTCACATTAAAAGATAACCTCAAAAATTCA<br />TGGTAGCTTACCAAAAGGGGCCATATTGTTATTTATTTAGTCTTGGTAACCAAACAGTTCCAAAATTTTTACTGTTTAAGTAGAAATGAGCTGAGCTTTG<br />AGAGATTTTTTTGTTGTTGTTTTAAAGATTATATTTCTTTATTTCTTTTTTGTCGGGGGTGAAGATGGGGTCTAAGGGTCTCACTATATTGCCCAGGCTG<br />GAGTGCAGTGGCTGTTCACAGGCACAATCATAGCTTACTACATCCTTGAACTTGAACATCCTTGAGATGGGAAGGCTCAAGAGATCCTCCCCCGCTCAGC<br />TTCCCAAGTACCTAGGACTACAGGCCGACACCATCATGCCTGGCCATACTTCACTTACCAGTAATCATAATGAAGATCGTGTATTTAACAGATGTTAAGC<br />TTACCAACTGTTCAGATGTGCATGTGAATTGGGGGTAGATTGTGAAGACATTTGCAATATTCTATCTCCCTGACATTATAATTGGGAAAAATTAGGTTTA<br />AATAACCGTGTGATAGAAAACCTGTATCTCTGTGATAAGTTCTCTAAGAGTGGTACAAGACATTTGCAATATTCTCTCTATCTCCCTAACGATGTAATTG<br />GAAAAATGAGGTTTAAATAACACTGTTCTATGATAGGTTCTCTAAGAGTGCTGCCAAGTGTTATAAGAGTTCAGAATGAGACCTTTAAAGTAGAATGAAC<br />GGAGAAGGTTTCCTGGAGTAGAGAGAATTTGAGCCAGGCCTGGAAGCTTAGGCAGGACTTTAACAGGAAGACATGGTGAGAGAACAGCATGCCTGAGAGA<br />GAAAATTCATGCTTGCCAGTCTGAGATAAGCCAGTATCATCTTCTTTCAGGTGCAAGTTTTGAAACTGCTTTTGAATTTGTCTGAAAATCCAGCCATGAC<br />AGAAGGACTTCTCCGTGCCCAAGTGGATTCATCATTCCTTTCCCTTTATGACAGCCACGTAGCAAAGGAGATTCTTCTTCGAGTACTTACGCTATTTCAG<br />AATATAAAGAACTGCCTCAAAATAGAAGGCCATTTAGCTGTGCAGCCTACTTTCACTGAAGGTTCATTGTTTTTCCTGTTACATGGAGAAGAATGTGCCC<br />AGAAAATAAGAGCTTTAGTTGATCACCATGATGCAGAGGTGAAGGAAAAGGTTGTAACAATAATACCCAAAATCTGATTGGTCATATTTTTCCAAAGAGT<br />AATGCAGTCTGGATATAAACGTATTTTCTGTCTTCCTTATAAGGGGATTCTCCCAGCTGCTAAATTTAAACAGTAAATATCACATTTTGTCATTAACACA<br />GCTATAACTTGCCGTGGTTCTCAGATTTATTTTGGACTATTTTGATGCCAAGTGAATATAAGAGCTTGTACTGAAACCATTTATTTCTTTCTATTTTGCT<br />ATTTGCAAATGCTTGTTATCTTCCCTACATGAAGTGGCAGTAACCTTTTTCACATTTAAGCTACCCTTCTACCTTTTGAAGTGATTTGCAGTTACTCATC<br />TGAGACAGCATCAGTATTTGACTAAATCATTGTTTCAC

Expression



Full and truncated open reading frames discovered in ENST00000479145

In silico ORF/peptide predictions
>peptide 1 (93 aa)
MTEGLLRAQVDSSFLSLYDSHVAKEILLRVLTLFQNIKNCLKIEGHLAVQPTFTEGSLFFLLHGEECAQKIRALVDHHDAEVKEKVVTIIPKI

>peptide 2 (50 aa)
IYTMEYYAAIKNDEFMSFVGTWTKLEIIILSKLSQEQKTKHCIFSLIGGN


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT122534 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8N2F6|ARM10_HUMAN (Evalue: 3.0E-60)