| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000276431 | tumor necrosis factor receptor superfamily, member 10b | protein coding | ENST00000479790 | 548 | 252 | UTR3 | Trans | |
| ENST00000448612 | WD repeat domain 27 | protein coding | ENST00000479790 | 521 | 268 | CDS | Trans | |
| ENST00000593250 | centrosomal protein 76kDa | nonsense mediated decay | ENST00000479790 | 536 | 264 | UTR3 | Trans | |
| TCONS_00070307 | pecanex homolog (Drosophila) | novel protein coding | ENST00000479790 | 607 | 257 | UTR5 | Trans | |
| TCONS_00075813 | forkhead box N3 | novel protein coding | ENST00000479790 | 630 | 288 | UTR5 | Trans | |
| TCONS_00075827 | forkhead box N3 | novel protein coding | ENST00000479790 | 630 | 288 | UTR3 | Trans | |
| TCONS_00107851 | transient receptor potential cation channel, subfamily V, member 1 | novel protein coding | ENST00000479790 | 613 | 277 | UTR5 | Trans | |
| TCONS_00107864 | transient receptor potential cation channel, subfamily V, member 1 | novel protein coding | ENST00000479790 | 613 | 277 | UTR3 | Trans | |
| TCONS_00119512 | zinc finger and BTB domain containing 7C | novel protein coding | ENST00000479790 | 531 | 257 | UTR3 | Trans | |
| TCONS_00123889 | ribosomal protein SA pseudogene 58 | novel protein coding | ENST00000479790 | 600 | 258 | UTR5 | Trans | |
| TCONS_00123899 | ribosomal protein SA pseudogene 58 | novel protein coding | ENST00000479790 | 600 | 258 | UTR5 | Trans | |
| TCONS_00124891 | zinc finger protein 540 | novel protein coding | ENST00000479790 | 648 | 264 | UTR3 | Trans | |
| TCONS_00132247 | zinc finger protein 43 | novel noncoding | ENST00000479790 | 607 | 265 | noncoding | Trans | |
| TCONS_00185321 | transferrin receptor | novel protein coding | ENST00000479790 | 602 | 263 | UTR5 | Trans | |
| TCONS_00202828 | myotubularin related protein 12 | novel protein coding | ENST00000479790 | 623 | 264 | UTR3 | Trans | |
| TCONS_00230128 | solute carrier family 26 (anion exchanger), member 5 | novel protein coding | ENST00000479790 | 615 | 267 | UTR3 | Trans | |
| TCONS_00249092 | transmembrane protein 245 | novel protein coding | ENST00000479790 | 642 | 263 | UTR5 | Trans |
>TCONS_00249092 (1810 nt)
GATTCAAGAAATGGAATTCCTTCAGTTTTCTAAAGGTTTGAGTTTCATGAGAAAAGAAGACTTTGCAGAGTGGCTACTTTTTTTCACTAACACTGAAAAT
AAAGATATTTATTGGAAAAATGTGAGAGAGAAGTTGTCAGCAGGAGAGAGCATTAGTTTGGATGAATTCAAGTCATTTTGCCATTTTACAACCCACTTGG
AAGACTTTGCTATTGCCATGCAGATGTTCAGTTTAGCTCATCGTCCTGTCAGACTAGGTAAGTTATATGAAAAACCATTTAATTTTTATCATCTATAAAC
AGTTTTACTATATTCTTCAACTAAATGCTACCAATCAAGGAACAAATTATAAGTAAAAATAGTTGATTGACCTTTTAATTCAGTGTGGTTATTCTAGATT
TAGAATACCAGTACTCCAGTTTAATGGTTACTTTCTATACTTTTATTTTCTCATTCTCCTAAAAAGAAGGAAGAAGGCCGGGCATGGTGGCTCATGCCTG
TAATCCCAGCACTTTGGGAGTCCAAGGTGGGCGGATCACAAAGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATA
CAAAAACTAGCTGGGCGTGGTGGCAGGCGCCTGTAATCCCAGCTATTCAGGAGGCCGAGGCAAGAGAATCGCTTGAACCCGGGAGACGGAGGTTGTAGTG
AGTCAAGATCGTGCCATTGCACTCCAGCCTGGGCGACGAGCAAGATTCATCTCAAATATATGTTTAGAGCATTGATTAAATTACAATAGCTCATTTGTCT
TGCAGTGACTCTCATGACATTCGTCGGCTTATGGTTTGAATATTTTCTTCATGGGTATTTTTGTTTTTGTTTTACTTCCCAAATAATAAAAATTTGGATT
TGCTTTTACTTCTCAAATAATGAAAATTTAGATTAATTTCACTTAGACTATTTCACATAGTTGATAAGTTGTTTTATGTTTGTTTTTTAGCGGAGTTTAA
GAGAGCTGTGAAAGTAGCAACAGGACAAGAACTCTCAAACAATATTTTGGACACTGTCTTTAAGATCTTTGATTTGGATGGTGATGAATGTCTTAGTCAT
GAAGAGTTTCTTGGGGTGTTAAAAAACAGAATGCATCGAGGTTTATGGGTACCACAACATCAGAGTATACAAGAATACTGGAAGTGTGTGAAGAAAGAAA
GCATTAAAGGAGTAAAAGAAGTCTGGAAACAAGCTGGAAAAGGTCTTTTTTAATAAAAGATATAATAGTATGGCAATTATATTGTTCCAAATGTCAAAAT
TTGTGATTTTTTAGAAGTACTTGCTATTTATCTTCTTAAGTCTTCATTGATATTCTGTGTGAAATAAGCATGTCTTGTACTTGCTTTCTGATTCATAATT
TTATTAAAGAACTTAGTAGAAAGAAAAGTAAGTATAAAAATAGATATTGGATTCTGTCAGAAGGCCTAGATTTGAAATAATGTTTTGTACTTCGGTAAGA
TGGAAAACTTAGTGATTCACTGATTTCTTAGACACTCTAATATGATATGCTTTCTGGAAGGATAAAACAAATACATATGGGAAAAAGTACTTGAGACCAA
GGCCAGCATCAATTCCAGACATCTTCATGTTCCTAATAGGCTAAATGAAGTTAAAAACTTATTTCAGATTTTTCTCATCTGTACCTTATATCTCATAAAT
TTATTGCATATTTTATGTCAGTAGCTTAGCTGTTTATTGTCTTTAAAATAACATGTAAACTTCAATGTTCTATCTGGAAGCAGAATAAAATATTTACATA
GATACAAAAAA
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.