Detailed information on ENST00000480380

lncRNA-RNA interactions

Number of interactions: 48

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000257287 centrosomal protein 135kDa protein coding ENST00000480380 600 304 UTR3 Trans
ENST00000304748 formyl peptide receptor 1 protein coding ENST00000480380 523 287 UTR3 Trans
ENST00000323816 growth arrest-specific 7 protein coding ENST00000480380 554 291 UTR3 Trans
ENST00000399322 diacylglycerol kinase, beta 90kDa protein coding ENST00000480380 591 303 UTR3 Trans
ENST00000410023 interleukin 1 receptor, type I protein coding ENST00000480380 506 297 UTR3 Trans
ENST00000424496 sense_intronic sense intronic ENST00000480380 592 291 noncoding Trans
ENST00000437099 growth arrest-specific 7 protein coding ENST00000480380 554 291 UTR3 Trans
ENST00000478730 ORAI calcium release-activated calcium modulator 2 protein coding ENST00000480380 600 306 UTR3 Trans
ENST00000506202 centrosomal protein 135kDa retained intron ENST00000480380 600 304 noncoding Trans
ENST00000513143 podoplanin protein coding ENST00000480380 537 301 UTR5 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000480380 620 297 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000480380 639 300 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000480380 608 308 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000480380 608 308 UTR3 Trans
TCONS_00037377 NAD synthetase 1 novel protein coding ENST00000480380 557 311 UTR3 Trans
TCONS_00050195 FYVE, RhoGEF and PH domain containing 4 novel protein coding ENST00000480380 601 297 UTR5 Trans
TCONS_00076763 protein phosphatase 1, regulatory subunit 13B novel protein coding ENST00000480380 608 301 UTR3 Trans
TCONS_00090929 nucleoporin 93kDa novel protein coding ENST00000480380 619 301 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000480380 565 284 UTR3 Trans
TCONS_00101146 myosin phosphatase Rho interacting protein novel protein coding ENST00000480380 567 294 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding ENST00000480380 574 302 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000480380 604 300 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000480380 633 298 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000480380 633 298 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000480380 610 301 UTR5 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding ENST00000480380 628 300 UTR3 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000480380 635 308 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000480380 635 308 UTR3 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000480380 635 308 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000480380 635 308 UTR3 Trans
TCONS_00141681 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000480380 635 308 UTR3 Trans
TCONS_00142157 LY6/PLAUR domain containing 6B novel noncoding ENST00000480380 612 303 noncoding Trans
TCONS_00142168 LY6/PLAUR domain containing 6B novel protein coding ENST00000480380 612 303 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000480380 601 306 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding ENST00000480380 601 306 UTR3 Trans
TCONS_00147115 ATPase family, AAA domain containing 2B novel protein coding ENST00000480380 601 306 UTR3 Trans
TCONS_00148048 potassium voltage-gated channel, subfamily G, member 3 novel protein coding ENST00000480380 640 302 UTR3 Trans
TCONS_00148048 potassium voltage-gated channel, subfamily G, member 3 novel protein coding ENST00000480380 593 300 UTR3 Trans
TCONS_00149280 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000416453} novel protein coding ENST00000480380 621 298 UTR3 Trans
TCONS_00149280 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000416453} novel protein coding ENST00000480380 565 302 UTR3 Trans
TCONS_00163095 T-cell lymphoma invasion and metastasis 1 novel protein coding ENST00000480380 529 301 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000480380 600 298 UTR5 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000480380 616 304 UTR3 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding ENST00000480380 617 301 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000480380 646 299 UTR5 Trans
TCONS_00235281 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 novel protein coding ENST00000480380 604 304 UTR5 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000480380 640 302 UTR5 Trans
TCONS_00253055 uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) novel protein coding ENST00000480380 615 294 UTR3 Trans

Sequence

>TCONS_00253055 (3891 nt)
TTTTGTATTTTTAGTAGAGATGGGGTTTCGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCGCCTGCCTTGGCCTCCCAAAGTGTT
GGGATTATATGTGTGAGCCACTGCGCCAGCCCTAAAATCTCATCCTTATGTAACCTAAGCCCAGGACTTAGGACTTAGTGGTTAACAGGTTCCTGTGTTT
AGTTGATTTTACCGAAGATGTTTGGGACTCTCAGATCTGATGGGCACTTGGCATTGCTGTTGCTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTG
TCACCCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTGCAACTTCAGCCTCCCTGGTTCAAGTGATTCTCCTGCCTCAGTCTGCTGAGTAGCTGGGA
CTACAGGTGCGTGCCACTGTGCCCAGCTCATTTTTAAATTTTTGGTAGAGACGGAGTTTCACCATGTTGGCCAGGATGGTCTCAATCTCCTGACCTTGTG
ATCCACACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCGCCGCGACTGGCCTATTGAATTCTTAAATATGAAGAAGCCAGCCCTGTTG
GCAGTTTATCAGCTTTAATCACCATTACTGAAACTGGTGCTATGATTGATCATGCCTGGTCCTCCAGTCTTCCCTGGCCACTGTACCGCAGCTGCATGAA
CAGCTGCGTTTGCTCAATGGGAAGGAGACTTCCTGCTGGGGGAGGTATGGGAGGGAGGCCCCGGGGAGAGGCATGAGGAAATCCAAGTGGCCTTCTACAT
TTTTCTCTTTCATCATTATCCATATCTTGATTCTAGAACTTTATTTTCTGGTGTCTCAGAAAGTTAAGAAACCAGTGTCTTCAAAAGTGAGAACCTTCAT
TCAGACCCATGCGTATCATTGGATTATTATTTTTGGCTATGTAAGGGAGCCTCATTGACCCATTTTTTTGTTTTAAATTCTTATTTAAATGTCTGCAATA
ATGACATTTTTGTAACTGGCCCTTGCTGGACACTGGATCGGTGTGAACATTCACTTCCTCCTGTGTAGTTGGACTACCTTCTGGAGCAATTCTTTCCCTT
CCTAAGGCTTTGCTGGATCCCCGCCGCCCCGAGATCCCAACAGAACAAAGCAGAGAGGAGAACTTAATCCCGTATTCTCCAGATGTACAGATACACGCAG
AGCGATTCATCAACTATAACCAGACAGTTTCTCGAATGCGAGGTATCTACACAGCTCCCTCGGGTCTGGAGTCCACTTGTTTGGTTGTGGCCTATGGTTT
GGACATTTACCAAACTCGAGTCTACCCATCCAAGCAGTTTGACGTTCTGAAGGATGACTATGACTACGTGTTAATCAGCAGCGTCCTCTTTGGCCTGGTT
TTTGCCACCATGATCACTAAGAGACTGGCACAGGTGAAGCTCCTGAATCGGGCCTGGCGATAAAGAACAAAGACTGTGCCTAAAAGTGGAGAGCCAGGGG
AGTGTGGGTCAGATAAGCAGCTACAGCTGCAGTTTGGTGGATTGGTGGAGTATGTGTGTGTGTCAGTGCTCAGCTAAGAACTGTAGGGAAGATGGATGAC
CTTCACGCAGAACTCCTTTTGGGATATACATGATGCAGAAAGGATCCTACATGGAGAGAGACAGAACTCTCTCAGCTGACACTCTCAGAGATTCCTGATG
GGCTTTCTCTTGAAGTCCAAAGGCGTCTGCATTGTTTCCTTTCTTTGCCCATCCATGAATGTTCTGTTTTGTTTTTTTTAATAAGAATTCCGGCTGATTT
TTGTGAGGCCTGTTTAAATTGACTTTACTTTGCCTTTTGTGTTTCTCAATTTTATCTAGAAATCTTTCTGACTTTTTCCATCTCTTGCTTCAAAGTAAGA
GGGGAACTCTCCTTGCCGACTCCACCTTATAGGTACATTTGGTGTTTTGCACTGGGAAGAAATAGGATCCATCCTTAGCTGAGGCTTGAGGACTGATCCA
GCCTCTCATGGCTTCCCTCCAAAGTAACTTAGGGTTGAGGGATCTATATGTGATGTCAAAACTTACTTTAAACCTCTAGTTTCGTGCTGTCATTTATTAG
GCTGGGCCACCAAATCTTTGTTTCAATTTATCAGAAGCCAAGTGCATACTAGCGTCTTGTTTGTTGCCCATTGCCTATACTTTTCACCTGAGATGTGTGA
GTTGGGGCCTTTTAAAAACTACTGAATTGTCTGAGCCTTGAAGACATTTCCAGGGAGAAGAGATAATCTCTCATTTCACCCACAGGCTGGTCTAATCATA
ACCTAGTTAAAGATGTCCTTGTTTAAGAACCCCATTATTTATTTTTAGTTTTTAATATAAATTAACATGTGGGTCATTATATTTCTCCTTAAATGAGGAA
ATTTTAAATTTTATTGATCTAACCTTTGAAGCTTTAAAAAAGGAGAAAGAGGGTAGGGGTGGGAAACTGGCATACTGTGTGTATAGCACTGCCGATTGGC
TAGGCCACTGTGTCTCTGCTACAAATTAAAGAAATCCTAAAAGTTTTCCTTGGTCATAGAGTTGGGGAATGACAGAATTTTTCTTTGTTGTGAAATGTAT
GTACAGAGTAGACCATCTCTAGCCCTGTGGTGAAAGAGGTACACTCGAATGTTTGCATAAAGCAAGTGACAAATGACACTGTTTAAGTCCTCTTTTGTGT
CTTAGAAGATCATTTTGAGGCTATTTTCACATTAGAGGGGATAAAAGCAGTGAAGACATGGAGTAAGTGTATTTTATTTTAGTAAGGAAAGGTCAGTTTA
ATCATATATGGGTTGGTTAGGTTATCTAAAAATTTGTCATCTTTCTATGGTCATATGCTGATGGTAGATTATGGCAGAGAAGGAAGAGGAAATGACAACC
ATTTTATTAATTGTCAGTTTGATATTGAGTGACTGAATGTCTAAGAATCTCCAGAAAAAAACAGGCATCTATCATCCTGACCCAAGGCATATTTTAACAT
AACCTGGGAGAAGAGAGTTAAGTACAAGTTAAAAAAAATTCTGCCCTAGTTTTGAGAAAGCCTGGCTGGAATTCTGACTGTCTTACATACATATGTGCAA
GGTTAGCCTGCAAGATTCTAGTTTTTATTTACCAGTGTGCCAGAATCTGAAACAAGCTACTGGGAGGGAAGGTATTTGTCCTTTAGTAAAATTCCCTGTA
TTTCAGCTGTAATCAAAGTTACCTCAAAGCAGGTGCTTTTTTTTTTTTTGAGACAGAATCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTT
GGCTCACGGCAACCTCCACCTCACAAGCAGCTGGGACTATAGGCATGTGCCACCACGCTCAGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCATT
GTGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCAAGTGATCTGCTGGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGAGCTTGGCC
AAGTGCTTAAAATAGTTAATGCTAATGCCACAGTCCAATTTAAATCTTTTCTTAGTTCTCAACTTTCCTTAATCTTAAAGCAGCATTCGGTTCTGAGCAG
CTACACTCAGTCTCCACTAATGGCTGCTGAGACTATGTTTCCTCTCTCAATTCTCTGATCTATTTGCTTTCTTGTCATTCCTTGTTTTTTGTGTGTATTC
CTTGACTTACCTCTTCTCCTGTCTTCATTAATTAGGTTAATTTTGGGGCCCCATGGTGTTTCACGTAAAAAGATTTGGCTGGGCGTGATGGCTCATGCCT
ATAATCCCAGCACTTTGGGAGGCCATAGTGGAGGATCTCTTGAGCCCAGGAGTTCCAGACCAGCCTGGGCAACATAGCAAGACTCTATCTAC

Expression



Full and truncated open reading frames discovered in TCONS_00253055

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.