Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000336505 | suppressor of cancer cell invasion | protein coding | ENST00000480768 | 616 | 291 | UTR3 | Trans | |
ENST00000359543 | epithelial membrane protein 2 | protein coding | ENST00000480768 | 619 | 292 | UTR3 | Trans | |
ENST00000494969 | colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) | protein coding | ENST00000480768 | 561 | 290 | CDS | Trans | |
ENST00000524264 | SAP30L antisense RNA 1 (head to head) | antisense | ENST00000480768 | 627 | 282 | noncoding | Trans | |
ENST00000532572 | protease, serine, 23 | retained intron | ENST00000480768 | 601 | 290 | noncoding | Trans | |
ENST00000549365 | DNA-damage regulated autophagy modulator 1 | nonsense mediated decay | ENST00000480768 | 523 | 259 | UTR3 | Trans | |
ENST00000556539 | signal transducer and activator of transcription 2, 113kDa | processed transcript | ENST00000480768 | 653 | 296 | noncoding | Trans | |
ENST00000572705 | transient receptor potential cation channel, subfamily V, member 1 | protein coding | ENST00000480768 | 629 | 292 | UTR3 | Trans | |
TCONS_00059486 | signal transducer and activator of transcription 2, 113kDa | novel protein coding | ENST00000480768 | 653 | 296 | UTR3 | Trans | |
TCONS_00059487 | signal transducer and activator of transcription 2, 113kDa | novel protein coding | ENST00000480768 | 653 | 296 | UTR3 | Trans | |
TCONS_00059488 | signal transducer and activator of transcription 2, 113kDa | novel protein coding | ENST00000480768 | 653 | 296 | UTR3 | Trans | |
TCONS_00059489 | signal transducer and activator of transcription 2, 113kDa | novel protein coding | ENST00000480768 | 653 | 296 | UTR3 | Trans | |
TCONS_00059491 | signal transducer and activator of transcription 2, 113kDa | novel protein coding | ENST00000480768 | 653 | 296 | UTR3 | Trans | |
TCONS_00059493 | signal transducer and activator of transcription 2, 113kDa | novel protein coding | ENST00000480768 | 653 | 296 | UTR3 | Trans | |
TCONS_00059495 | signal transducer and activator of transcription 2, 113kDa | novel protein coding | ENST00000480768 | 653 | 296 | UTR3 | Trans | |
TCONS_00059497 | signal transducer and activator of transcription 2, 113kDa | novel protein coding | ENST00000480768 | 653 | 296 | UTR3 | Trans | |
TCONS_00065093 | UBA domain containing 2 | novel protein coding | ENST00000480768 | 662 | 292 | UTR5 | Trans | |
TCONS_00065094 | UBA domain containing 2 | novel protein coding | ENST00000480768 | 662 | 292 | UTR5 | Trans | |
TCONS_00080928 | SH3-domain GRB2-like 3 | novel protein coding | ENST00000480768 | 635 | 293 | UTR5 | Trans | |
TCONS_00095049 | epithelial membrane protein 2 | novel protein coding | ENST00000480768 | 619 | 292 | UTR3 | Trans | |
TCONS_00095050 | epithelial membrane protein 2 | novel protein coding | ENST00000480768 | 619 | 292 | UTR3 | Trans | |
TCONS_00095052 | epithelial membrane protein 2 | novel protein coding | ENST00000480768 | 619 | 292 | UTR3 | Trans | |
TCONS_00107851 | transient receptor potential cation channel, subfamily V, member 1 | novel protein coding | ENST00000480768 | 629 | 292 | UTR3 | Trans | |
TCONS_00118919 | potassium channel tetramerization domain containing 1 | novel protein coding | ENST00000480768 | 633 | 292 | UTR3 | Trans | |
TCONS_00119961 | ring finger protein 152 | novel protein coding | ENST00000480768 | 674 | 293 | UTR5 | Trans | |
TCONS_00132247 | zinc finger protein 43 | novel noncoding | ENST00000480768 | 624 | 291 | noncoding | Trans | |
TCONS_00135884 | zinc finger protein 347 | novel protein coding | ENST00000480768 | 631 | 291 | UTR5 | Trans | |
TCONS_00140732 | NCK adaptor protein 2 | novel protein coding | ENST00000480768 | 614 | 288 | UTR5 | Trans | |
TCONS_00141670 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | ENST00000480768 | 602 | 292 | UTR5 | Trans | |
TCONS_00141673 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | ENST00000480768 | 602 | 292 | UTR5 | Trans | |
TCONS_00141679 | Rho guanine nucleotide exchange factor (GEF) 4 | novel protein coding | ENST00000480768 | 602 | 292 | UTR5 | Trans | |
TCONS_00194682 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | ENST00000480768 | 624 | 288 | UTR3 | Trans | |
TCONS_00240688 | metastasis suppressor 1 | novel protein coding | ENST00000480768 | 665 | 293 | UTR3 | Trans | |
TCONS_00249683 | suppressor of cancer cell invasion | novel protein coding | ENST00000480768 | 616 | 291 | UTR3 | Trans |
>TCONS_00249683 (1277 nt)
CGCGAGCACTTCCGGGTCGTCAGCTCAGTTCTGCGGTTTCTGCGGCGGCTGGAGAGGTGGTCGGAGAAGTAGGAACCTCCTGCCGGGCTCGTGGCGGCTT
CTGTCCGCTCCGCGGAGGGAAGCGCCTTCCCCACAGGACATCAATGCAAGCTTGAATAAGAAAAACAAATTCTTCCTCCTAAGCCATGGCATATCAGTTA
TACAGAAATACTACTTTGGGAAACAGTCTTCAGGAGAGCCTAGATGAGCTCATACAGGTGGGAGACTGAATTAAAAATCAAACATTTTTATCTTGATGGG
TTTACAGTAATTCTTGTCATATCACTTAGGCAAAGAGATATGAGGTAAAATATCTTGGACTATTTGACCCAGCAAGTCAGTAACACTGATTAAATTACCT
CAAATTCTTGTTTATTACACTGTCCTGACAACAGGACACAAAACATGATTGAATGATATCATTAAATATAGCTAAATCTGGGTACATGCAGTGTTTCATG
CCTCTAATCCCAGCACTTTAGGAGGACAAGGTGGAAGGATCGCTTGAGGCCAGAAGTTTGAGACCAGCTTAAGCAACATAGCACCACCCATCTCCACAAA
AAATAAAAAAATTAGTTCGGTGTGGGCGCATGCCTATAGTCCCAGTTACTCGGGAGGCTGAGGTGAGAGGATGGCTTGAACCCAGGAGTTTGAGGCTTAA
GTGCACTATGATGGTACCACTGTACTCCAGCCTTGGTGACAGAGCAACATCCTGCCTCTAAATAAATAAAGTTAAATCTTCAAAAATTTTTGTTCAACAT
AAAAATTGAGATTGTTGGTTTCCCCCTTCTCAAATTTAGGGAAGAAAGTCATATACTTTTTAGCTTTAAGATAGTTTTGTCCAATTTAAGTCTTCTGAGA
TTTACAAGTCTGAATTTATATTTCAATTTTAAGAGAATTAACCCTTCTGTATAATTCTCCCAAATAAAAACATATTAAGTATTTCCAGCTGGGCACCATG
GCTCATGACTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACCCAAGGTCAAGAGTTAGAGACCAGCCTGACCAACATGGAGAAACCCTGTC
TCTACTAAAAATATAAAATTAGCTGGGTGTGGTGGCACACATCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAATGCGGGAGGCA
GAGGTTGTGGTGAGCTAAGATTGCGCCATTGCACTCCAGCCTGGGGAACAAGAGCGAAACTCCGTCTCACAAAAAAGG
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.