Detailed information on ENST00000480768

lncRNA-RNA interactions

Number of interactions: 34

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000336505 suppressor of cancer cell invasion protein coding ENST00000480768 616 291 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding ENST00000480768 619 292 UTR3 Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000480768 561 290 CDS Trans
ENST00000524264 SAP30L antisense RNA 1 (head to head) antisense ENST00000480768 627 282 noncoding Trans
ENST00000532572 protease, serine, 23 retained intron ENST00000480768 601 290 noncoding Trans
ENST00000549365 DNA-damage regulated autophagy modulator 1 nonsense mediated decay ENST00000480768 523 259 UTR3 Trans
ENST00000556539 signal transducer and activator of transcription 2, 113kDa processed transcript ENST00000480768 653 296 noncoding Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000480768 629 292 UTR3 Trans
TCONS_00059486 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000480768 653 296 UTR3 Trans
TCONS_00059487 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000480768 653 296 UTR3 Trans
TCONS_00059488 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000480768 653 296 UTR3 Trans
TCONS_00059489 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000480768 653 296 UTR3 Trans
TCONS_00059491 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000480768 653 296 UTR3 Trans
TCONS_00059493 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000480768 653 296 UTR3 Trans
TCONS_00059495 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000480768 653 296 UTR3 Trans
TCONS_00059497 signal transducer and activator of transcription 2, 113kDa novel protein coding ENST00000480768 653 296 UTR3 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding ENST00000480768 662 292 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000480768 662 292 UTR5 Trans
TCONS_00080928 SH3-domain GRB2-like 3 novel protein coding ENST00000480768 635 293 UTR5 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding ENST00000480768 619 292 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding ENST00000480768 619 292 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding ENST00000480768 619 292 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000480768 629 292 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000480768 633 292 UTR3 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000480768 674 293 UTR5 Trans
TCONS_00132247 zinc finger protein 43 novel noncoding ENST00000480768 624 291 noncoding Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000480768 631 291 UTR5 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000480768 614 288 UTR5 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000480768 602 292 UTR5 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000480768 602 292 UTR5 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000480768 602 292 UTR5 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000480768 624 288 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000480768 665 293 UTR3 Trans
TCONS_00249683 suppressor of cancer cell invasion novel protein coding ENST00000480768 616 291 UTR3 Trans

Sequence

>TCONS_00249683 (1277 nt)
CGCGAGCACTTCCGGGTCGTCAGCTCAGTTCTGCGGTTTCTGCGGCGGCTGGAGAGGTGGTCGGAGAAGTAGGAACCTCCTGCCGGGCTCGTGGCGGCTT
CTGTCCGCTCCGCGGAGGGAAGCGCCTTCCCCACAGGACATCAATGCAAGCTTGAATAAGAAAAACAAATTCTTCCTCCTAAGCCATGGCATATCAGTTA
TACAGAAATACTACTTTGGGAAACAGTCTTCAGGAGAGCCTAGATGAGCTCATACAGGTGGGAGACTGAATTAAAAATCAAACATTTTTATCTTGATGGG
TTTACAGTAATTCTTGTCATATCACTTAGGCAAAGAGATATGAGGTAAAATATCTTGGACTATTTGACCCAGCAAGTCAGTAACACTGATTAAATTACCT
CAAATTCTTGTTTATTACACTGTCCTGACAACAGGACACAAAACATGATTGAATGATATCATTAAATATAGCTAAATCTGGGTACATGCAGTGTTTCATG
CCTCTAATCCCAGCACTTTAGGAGGACAAGGTGGAAGGATCGCTTGAGGCCAGAAGTTTGAGACCAGCTTAAGCAACATAGCACCACCCATCTCCACAAA
AAATAAAAAAATTAGTTCGGTGTGGGCGCATGCCTATAGTCCCAGTTACTCGGGAGGCTGAGGTGAGAGGATGGCTTGAACCCAGGAGTTTGAGGCTTAA
GTGCACTATGATGGTACCACTGTACTCCAGCCTTGGTGACAGAGCAACATCCTGCCTCTAAATAAATAAAGTTAAATCTTCAAAAATTTTTGTTCAACAT
AAAAATTGAGATTGTTGGTTTCCCCCTTCTCAAATTTAGGGAAGAAAGTCATATACTTTTTAGCTTTAAGATAGTTTTGTCCAATTTAAGTCTTCTGAGA
TTTACAAGTCTGAATTTATATTTCAATTTTAAGAGAATTAACCCTTCTGTATAATTCTCCCAAATAAAAACATATTAAGTATTTCCAGCTGGGCACCATG
GCTCATGACTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACCCAAGGTCAAGAGTTAGAGACCAGCCTGACCAACATGGAGAAACCCTGTC
TCTACTAAAAATATAAAATTAGCTGGGTGTGGTGGCACACATCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAATGCGGGAGGCA
GAGGTTGTGGTGAGCTAAGATTGCGCCATTGCACTCCAGCCTGGGGAACAAGAGCGAAACTCCGTCTCACAAAAAAGG

Expression



Full and truncated open reading frames discovered in TCONS_00249683

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.