Detailed information on ENST00000480885

lncRNA-RNA interactions

Number of interactions: 13

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000264893 septin 11 protein coding ENST00000480885 541 298 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000480885 578 275 noncoding Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000480885 617 269 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000480885 623 275 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000480885 623 275 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000480885 562 249 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000480885 623 277 UTR3 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000480885 600 278 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000480885 600 278 UTR3 Trans
TCONS_00144404 miRNA novel protein coding ENST00000480885 525 315 UTR3 Trans
TCONS_00185516 transcribed_unprocessed_pseudogene novel protein coding ENST00000480885 603 274 UTR5 Trans
TCONS_00185519 transcribed_unprocessed_pseudogene novel protein coding ENST00000480885 603 274 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding ENST00000480885 519 266 UTR3 Trans

Sequence

>TCONS_00195633 (4571 nt)
GAGCGGCGGCGGCGGCAGCGGGTCTTGGGTCCTCCGAGAGCAGCAGCGATTTTCTATTTTGTACATACATTATTTTGTATATACTGTATATGATGACTTC
AGTGAGCAGTGACCATTGTCGAGGTGCTCGGGAAAAACCACAGATTTCAGCAGCACAATCAACGCAACCACAGAAACAAGTGGTACAGGCAACAGCTGAA
CAGATGCGTCTCGCTCAAGTGATCTTTGATAAGAATGATTCAGATTTTGAAGCTAAAGTTAAGCAGGTATGTTTCTGGCAAAGGATATCATCATTTTTAT
AATCTATTTTGATTGTGCTTAAAAAGATAATTTCAGTAAAGATTTTTGTTTTAAAGTATTACTTCTAGCTTCTAGTCTCACCTGAAATCTGTATATTGGA
TTTTGGACTTGTGATTAAAAATACCTTTATTGGTGGGCAAGTGAAGGAATTGAATACGTTCACCTGCCTTACAATATAATCTTTCTGAGTTACTAGTGTT
TACATGTGAACATTGAACCAGACATTTCTGTAAGCACACTGAGGTTTTCCGATACCTGTGCATAGAAAGTATATCTAACATTTGGCACAGTCTCTGGGAA
TTGTGTTTAATGTTAGAGATGAACTGAATTACCTTTAAAAAATTTTTTTTTCATAGAGACGTGGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGTGC
TGTCATAGTTCACTGCAGCCTCAAACTCCTAGGCTCACGCTATCCTGCTGCCTCGGTCTCCTGAGTAGCTATGACGACAGATGTTCATCACCATGCCCAG
CTAATTTTTAAAATATTTGTAGAGACAGAGTCCTGCAGTGTTGCCTAGGCTAGTCTTGAATTCCTGGGCTCAAGCAATCTGCCTTGGCCTCCCAGAGTGC
TGGGATTACAGGATTACTGGCCTGAATTGCCATTTCAAACATGGTTGTGATTTCATACTCTTGTTGGAAAAGTATAAAATTAAATTTTAAGGCAATGTCT
TCATTTTGAACTTTAATAAGAGGTATTTTTGATAACTTAGTCTTAATTTCTAACTCTTCTTTGCTGACCCTTTCTCATCAAGATCCTAGAAACCAAGCTG
TAACCGCTACCTCAGTGCCAGATATTCCAACTCTTGGTAGATGTCGTCTAATAATTGTTCTTTGGAGTAAAGGTCTCACAATGAAATCTTGTTTTGTCTC
ACAAGAAATCATAGATTTCTTTCTCTGGAATGAGATCTTCATACAGTTTGAGATATACTTCTGTATATTACATTGCCTTTTATCTGAATAGTATAGATAG
AACACTGGCCCAGGAGTTCAGAGATTTAAGTTCTAATTTTAGTTCTGTCTGTCAATAATCTGATCACTGGGGAAATTTTGATGTTGACTGTGTGTCTTAA
AAATTGTATGTTGCAGGCATTCACTTAGTACAGATCATTGATAAAAATGAGACATTTATTAGTAGCTATCCAAAGACTGAAGCATCAGAAAGCTATAGAG
TATGCAGAACTTTTGCTGCTTGATAAAATGAAAAGATGAAAGCAGGGAGGCCAAATGGTATAGTGCAGAGAGCTGTGATTATGAGATCAGGAGGCCTGGG
TTCTAGATGGGCTTTGCTATTAATTACCTTTGTGACCATAGACAAATCACTTGATATGTTGGGATCAAGCTGTTTTGAACTTCAGCTAGTACATGTTAAA
ATAGTTAAATGTAGTTAAAATGCAATAGATATTAAATCATAGATTTATTCACTGATACTTGAGAAACCTGCATTTTGCCTAGTCTGTGATCGTTCTAGTG
ATGAAAATGCTAAGTAACAAGTATCTCTTGCTAATGAGAATAAACTGAAGAGTTTCTTTCATCATTACTTCAAGCATAGCACCATGTTGAAGATCCTTGA
GAAAATATGTCTAGGAGTGTGTTTTGTGATAGTAGCAGAATTCCACTTGTAAGACTTTAGGGTGTCATATAACTTAGTATGTACATGGAATGATGTTTTT
TCTTCTTTTTTTTGAGGGGGGAGACAGGGTCTCGCTCTGTCTCCTGTGCTAGAGTGCAGTGGCACAATCATGGCTTATTGCAACCTTCACCTCCAGGGCT
GAAGCAATCCTCCTACCACTACGCTCGGTTAATTTTTTGTAAAGATGAGGTCTCACTATATTGTCCAGTCTCGAACTCCTGGGCTCAAGCAATCCTCTCG
TCTCTGCCTCCCAAAGTGTTGATTATAGTTGTGAGCCACTGCGGCTGGCCTTTGAAGTGTTCTAATCCAAATGGTGAAAGCCAGCATATGGAATATTGTC
CCTGACAAAAAATTTGTATTGGATTTTCCATGAATGATGACCGTGTACTCATATAGTTCCACCTCATATTTAAGTTTAGGAATCCTGTGTGCTTGAATTA
AATTTGATTATTCAGATACTTGATCTTGGGTATTCTGAGAATGTTGGTACGTATGTGTGTGCTGCTGATTAATGATCTGCTCCTTGGTCAACTTGGAGGA
AGATTGATTTGTAGTTAGATTCTACCAGTGTTAGTGAAAAGACATGCATGGAATGGCCACAAAAAAATAAGTAAACATGTCCTCATTGTAAACTCAAGAG
TCTAGAAGAGGCCATCTTCATGTAGAAGGATTATGTAATTCTGTATTTGTATAGAAGAATCTTAATATCAAGTGCCAGTTTTTTGTTTGCCTCTAACCAT
TTTCTGATATGTTCACTAGCTTATGGAAGTGACAGGGAAAAATCAGGATGAATGCATAGTGGCCCTACATGATTGTAATGGAGATGTGAACAAAGCTATC
AATATATTGCTGGAAGGGAATTCAGACACAGTAAGTATTATTAATTGATTTGCATTGTTTACATTTGTCTCCAATTCCGTAGCACATTTTCAACTTCACC
TTGTTTGGGGGTAGGGATGGAATGGATTATGGTGCCATTCCATATTTGTTTTAAGTTCCAGAAAGAACGATTACCTGAAAAGACTGTTTTTGTTATGTAT
GGTTTCTTCATGAAGTCGTAGAATCTGATGACTTGAAAGAGAACTTGGTGATCTACTCCAGCCTTACAGTTTCCAAAAATCTCTGTGCCTGTGTATATTT
TCACCACCCCCACCTGAAAAGCATCTCTTGGCTCTGTTGCTTATGTTTCTTCATCTCAGTCCTCACCTCTGATTACTTCTTACATCTCTATTATAACAGA
AAACCAGGATTTGCTGGTATATGTATTTGCTTATGTGGAATATTAAGTTTTCTTTTTTTTTTTTAATATTGGGTTAAGTTTGGTGAGCTTGCAGGCTCAT
GAGCTCAGGCCTTGGATTTTAAGAAGGATACAGCTAAAGCTACACCAGGCACTTGTCAGCCCTAAAATTTTGCTGTGTGTATATATTTATATTTATATAT
TATAGTTTTTATACATATGTATATATTTATTTATAAATATATATTTATTTAATAATTTTAAATTTTAAATAATTTAATTTTAAATTAAATTAAATTATTT
AATAATATATTTAATAATATAAATATATTTATATATTTAATAATATAAATATATATATTTAATAATATAAATATATTTATATATTTAATATATATTATAT
ATAATATTTATAATATTTGTTTAATAATATATAAATATATATACTTTATATATATATTTATATTTAATATATATATTTATATATTTATTTATTTTTTTGA
GACAGCCTCACTCTGCCACCCAGGCTGGAGTGCAGTAGTGTGATCTTGACTCACTGCAACCTCCGTCTCCTGGGTTCAAGTGATTCTTTTGCCTCAGCCT
CCCAAGTAGCTAGTACTACAGGCATGCGCCACCACGACCAGCTAATTTTTGTATTTTTAGTAGAGGTGGGGTTTCGCCATGTTGGCCAGACTGGTCTCAA
ACTCCTGACCTCAGGTGATCCACCCGTCTTGGCCTCCCAAAGTGTTGGGATTACAAGTGTCAGCCACCACACCTGACCTGTGTTTATGTTTCTTAAATTG
AGGAAACTATTTTAGAGTAGATTAAAAAAAAATGACTCACCTAAAAGAGGATACAAAGATGAACACATCAATAACTACCTTTCCTTGGAAAATTTAAAAC
AAACAAACTGACCGTGTCAGTGTTCAGATTTAATTGAAGTCTCATTTTAGGGTCATGCTGCATTAGGTACAAGAAATACAAAAATGAACTCTGAGAAACT
GAAAGCTAAAATGACTGTGTTTTTAGTTGATGTGAAACAAAGAGAATGAATTCTTTTAAAGTAAAAATTAACTAATGTGGAAAAGATTTCACTGTTTGAG
TGTAGCAGTAATTGTTGGTAAAATTCCATGTAAGAGAACACTGGTACACAAGACAAACCATCAAATTTGTGATTTTTTTTTTTTGGGAAAACCATATTAT
ATGATAAATTAAAATTTTGAATAGTTTTTGTTTACTGACCTGGGACTAAGTATCCTGGGTTTTGCAAAATATGGAGGATCTGTTTACCTTATCGCTAATG
GGTACAGCAGAGAGTGGCTTTCAGTTATTTTCAAAGTGAACTGAAGAGCCTAACCGCCCTCTTTGTTTAGGG

Expression



Full and truncated open reading frames discovered in TCONS_00195633

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.