Detailed information on ENST00000481368

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000439138 transmembrane protein 98 protein coding ENST00000481368 503 299 UTR5 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000481368 539 321 UTR3 Trans

Sequence

>ENST00000481368 (1588 nt)
GAGGGGCGGGAGCCCGCGGGGGCCGCGCCCTTCTCTCGCTTCGGACTGCGCAACGCTGCGCTCTGGGCTGACAGGCGGATAAAACGGTCCCATCAAGACT<br />GAGAAAAAGCACACCAGCTATTGGCACAGCGTGGGCAGTGGGGCCTACAGGATGACTGACTTAGTCTACAGAGATCCCGGCGTACTTAAGCAGGTAGTAA<br />TGATGGACAGGTGAGGCTTTAGGCGGCCGCCCTGGGATCTGAATTGCCCCTTGGCCCTTATCGAAGCTGCAGCTGCTTCCGCATAGCTGCTGTGGTCAAA<br />AAGGAGCCCAGAGTGACAGTTTTCCTTGACGGTCGCCGTTCTGTTTGTTGTAACTGATCTGCAACATTTTGGGAAAATACAGTTCCATTGTACCTGCCAC<br />CTTTCAGCTGTAGCCAGAGACCTTTATCAAAATGGGCTTGTTTCCACAGAACAGCAGAACGGTTGGGGGTTTGCATGTACAGTTAACCAGCATAAGACTC<br />GTACTGGGAAAATCCAGCTGGGATGTGACACAGCTTAACTGATAGCTTAAGGCATCAGTATTGGGACCAAAGGCTGGTCAGATTTGTATCATTCTGAGGA<br />CCAAATGATGGGAACAATAAAATTGTTCATGACAGTTGTTCTCATTTTGCTGTCCAGATGAAGACTCTTAAGATGACAGAAGGTGATTTTTCTGGTGATC<br />GAGGACTTCCGGGGTAATGACAGTGATGAAATGCAGGGGACCTGGTAGGTTTCTTTTGGAGACTAACTGGGGGCTGCCTGGTGGGACAGAACAGCATGTT<br />TCCAAGGGCTGTGGCTGGTCATAGCCATGGGATCTCCAACTGCATGCAAGAGCAACCTGGAAAGACTTTGACAGCGCAGGTCAGTACAATACCTGCAAGC<br />TGCCACTCAGCTTTCCTATAATGTTTCAGGACCAGGGCTGGAAGCCTTCCATGTGTCAACTTCAATGTAGATGGGTTTTTTTTTTTTTTTTTTTTTGAGA<br />CGGAGTCTTGCTCTGTCACCCAGGCTGCTGGAGTGCAGTGGCATGATCTCGGCTCATGGCAACCTCTGCCTCCTGGGTTCAAGCGACTCTCCTACCTCAT<br />CCTCCCGAGTAGCTGGGATTACAGGTGCCCACCATCACACCCAGCTAATTTTCTTGTATTTTTAGTAGAGATGGTTTTCACCATGTTGGCTAGATGGGTC<br />TCGAACTTCTGACCTCGGGTGATCCGCCCGACTCGGCCTCCCCTTCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCTCCTGGCCAGTTTAGTTTTCA<br />CGCTAAGCTTTTTGTTCTGCAGGTTGCCCCCAAGTTTCCTGGCAGTGTGTGATACTGAGGAGGTGAGCTTGTTTCTGGAGCTGTGCTTTAAGATTCATGT<br />TACATGTAAAGCTGTCCTCATTTGTGACTATGGACCTATGGAGTTGGGACAATCTCTATGGGAAGCAGAAGGCAAGGACCCCGGTCATTTTAGGTAGAAA<br />CAACAGCATGCTAATGCAAAAAATTATGCAGTGTGCTACTGAACTTCAGAGGTGATCAATAAAAGAAGAATAAAAAGACTAATAAAAG

Expression



Full and truncated open reading frames discovered in ENST00000481368

In silico ORF/peptide predictions
>peptide 1 (64 aa)
MGFFFFFFLRRSLALSPRLLECSGMISAHGNLCLLGSSDSPTSSSRVAGITGAHHHTQLIFLYF

>peptide 2 (52 aa)
MLHVKLSSFVTMDLWSWDNLYGKQKARTPVILGRNNSMLMQKIMQCATELQR


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT001973 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q9BXW3|SNH12_HUMAN (Evalue: 2.0E-33)