Detailed information on ENST00000481368

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000439138 transmembrane protein 98 protein coding ENST00000481368 503 299 UTR5 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000481368 539 321 UTR3 Trans

Sequence

>TCONS_00116668 (1587 nt)
GAGGGGCGGGAGCCCGCGGGGGCCGCGCCCTTCTCTCGCTTCGGACTGCGCAACGCTGCGCTCTGGGCTGACAGGCGGATAAAACGGTCCCATCAAGACT
GAGAAAAAGCACACCAGCTATTGGCACAGCGTGGGCAGTGGGGCCTACAGGATGACTGACTTAGTCTACAGAGATCCCGGCGTACTTAAGCAGGTAGTAA
TGATGGACAGGTGAGGCTTTAGGCGGCCGCCCTGGGATCTGAATTGCCCCTTGGCCCTTATCGAAGCTGCAGCTGCTTCCGCATAGCTGCTGTGGTCAAA
AAGGAGCCCAGAGTGACAGTTTTCCTTGACGGTCGCCGTTCTGTTTGTTGTAACTGATCTGCAACATTTTGGGAAAATACAGTTCCATTGTACCTGCCAC
CTTTCAGCTGTAGCCAGAGACCTTTATCAAAATGGGCTTGTTTCCACAGAACAGCAGAACGGTTGGGGGTTTGCATGTACAGTTAACCAGCATAAGACTC
GTACTGGGAAAATCCAGCTGGGATGTGACACAGCTTAACTGATAGCTTAAGGCATCAGTATTGGGACCAAAGGCTGGTCAGATTTGTATCATTCTGAGGA
CCAAATGATGGGAACAATAAAATTGTTCATGACAGTTGTTCTCATTTTGCTGTCCAGATGAAGACTCTTAAGATGACAGAAGGTGATTTTTCTGGTGATC
GAGGACTTCCGGGGTAATGACAGTGATGAAATGCAGGGGACCTGGTAGGTTTCTTTTGGAGACTAACTGGGGGCTGCCTGGTGGGACAGAACAGCATGTT
TCCAAGGGCTGTGGCTGGTCATAGCCATGGGATCTCCAACTGCATGCAAGAGCAACCTGGAAAGACTTTGACAGCGCAGGTCAGTACAATACCTGCAAGC
TGCCACTCAGCTTTCCTATAATGTTTCAGGACCAGGGCTGGAAGCCTTCCATGTGTCAACTTCAATGTAGATGGGTTTTTTTTTTTTTTTTTTTTTGAGA
CGGAGTCTTGCTCTGTCACCCAGGCTGCTGGAGTGCAGTGGCATGATCTCGGCTCATGGCAACCTCTGCCTCCTGGGTTCAAGCGACTCTCCTACCTCAT
CCTCCCGAGTAGCTGGGATTACAGGTGCCCACCATCACACCCAGCTAATTTTCTTGTATTTTTAGTAGAGATGGTTTTCACCATGTTGGCTAGATGGGTC
TCGAACTTCTGACCTCGGGTGATCCGCCCGACTCGGCCTCCCCTTCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCTCCTGGCCAGTTTAGTTTTCA
CGCTAAGCTTTTTGTTCTGCAGGTTGCCCCCAAGTTTCCTGGCAGTGTGTGATACTGAGGAGGTGAGCTTGTTTCTGGAGCTGTGCTTTAAGATTCATGT
TACATGTAAAGCTGTCCTCATTTGTGACTATGGACCTATGGAGTTGGGACAATCTCTATGGGAAGCAGAAGGCAAGGACCCCGGTCATTTTAGGTAGAAA
CAACAGCATGCTAATGCAAAAAATTATGCAGTGTGCTACTGAACTTCAGAGGTGATCAATAAAAGAAGAATAAAAAGACTAATAAAAG

Expression



Full and truncated open reading frames discovered in TCONS_00116668

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.