Detailed information on ENST00000481451

lncRNA-RNA interactions

Number of interactions: 31

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000463954 SET domain containing 6 retained intron ENST00000481451 605 266 noncoding Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000481451 673 297 UTR3 Trans
TCONS_00027001 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000481451 639 291 UTR3 Trans
TCONS_00027009 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000481451 639 291 UTR3 Trans
TCONS_00034642 CD82 molecule novel protein coding ENST00000481451 614 293 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000481451 614 293 UTR3 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000481451 621 306 UTR5 Trans
TCONS_00065097 UBA domain containing 2 novel protein coding ENST00000481451 621 306 UTR3 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000481451 621 306 UTR5 Trans
TCONS_00083866 RAB27A, member RAS oncogene family novel protein coding ENST00000481451 618 296 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000481451 673 297 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000481451 673 265 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000481451 673 265 UTR3 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000481451 504 284 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000481451 620 294 UTR3 Trans
TCONS_00137691 FOS-like antigen 2 novel protein coding ENST00000481451 715 290 UTR5 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000481451 602 260 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000481451 649 297 UTR5 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000481451 649 297 UTR5 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000481451 649 297 UTR5 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000481451 602 260 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000481451 621 298 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding ENST00000481451 621 298 UTR5 Trans
TCONS_00148387 reticulon 4 novel protein coding ENST00000481451 636 307 UTR3 Trans
TCONS_00148389 reticulon 4 novel protein coding ENST00000481451 636 307 UTR3 Trans
TCONS_00163084 T-cell lymphoma invasion and metastasis 1 novel protein coding ENST00000481451 620 297 UTR5 Trans
TCONS_00185321 transferrin receptor novel protein coding ENST00000481451 635 293 UTR5 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding ENST00000481451 648 292 UTR5 Trans
TCONS_00202516 family with sequence similarity 173, member B novel protein coding ENST00000481451 620 293 UTR5 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000481451 663 307 UTR3 Trans
TCONS_00249092 transmembrane protein 245 novel protein coding ENST00000481451 610 284 UTR5 Trans

Sequence

>TCONS_00249092 (8618 nt)
TGGTGTCCTGTAGTTCTACCAGTACTCTATTAACAGGAATTAGCTATATGACAAGCAAACTATTTAAGTTAAATGTTTCTACACCACTACTTCAGTGATT
GTCAGTAGTATTTGTCATAGTGTTTCTGAAAGACTGCAAGGTTCCACGTGCCCTTTAAATCATTGGAGAAGACTAAATCATGTTCAACATTATAATTGAT
GCTGAGCAGATTTTATTACATTTTATTCACAGCCTTAAAAATGTATAATTTAAATACAGACTATGTGCTAAACAGTCTACAGATAGAAATAATGATTAAC
TGAGTACCTTATTTACTGAATAGATCACATAAGAAAAGCAAAAATATATGTTAAAAATTTATGATACCTCTGATTCTTTCATCCACTTTAGTGAGGTGTT
AATGTGAGATTCTGCTGTTACCACAGTCATTGTTTTCCTGTACTTGTGAACGATTTATCATTGATCCAAGTATTGGAATTCCTTCTTTAAATTTCTAATG
AAAAGTTTTGTTTTGAAACTTCTGATTTGTTTTAAGAATTTTGCTATTCTTTTTTCTGCTGACTTTGGATTCATCCATTGAGTCTTTCAACATTTATTGA
ATACACTATGGTTTTGGTAATAGTCTCTGTCTTGAAGCCAGGAAAGACTGAATATGCCACAATCCCAGAATCATGGGTAGGAATGGAGAAAGGGAAGAAA
ACAGCAAAGAGCTGTAAGCCAATAGTAAGTGTGCCAATAAACAGGGTCTAGAGCACAGCAGTTGGGCTTGGAAGAGTTACACACACTTGGCTAGAATGTA
TTATAGTCAGGATCTGAATCTATATTCCCTAATGCCCCTGAGCCTATTTCCTTACCTCTTAGGTGGGGGTAGAGCCCCTATGCATAGGGTAGACAGGAGT
AGTAAAGGAGAAAAATGTGTGAACTAGTACCTGCCCGAGTAAGCACTCATTACGTGATAGCTATATTATAAAATATTATTCTAACAGAAAAATTAGTGTG
ATAACTTAAGGAGTACATACATGGACTATAATTTTTATATGTATCTGTCAACCGTATGCAAACGGATGAATAATTAGAAATTCTGCGAGAAAACAGGTTC
ACATGTATAATGCTGGTTGCAAAATGATTCATTTTATTTACTATTTCAGGTACCAAAGCAGTCAGACTCACAGCCTAATTCTGATAACCTAAGTCGCCAT
GGTGAATGTGGGAAAAAGCAAGTGTCTTACAGAACTGATATTGTTGGTGGCGTACCCATCATTACTCCCACTCAGAAAGAAGAAGTAAATGAATGTGGTG
AAAGTATTGACAGAAATAATCTGAAACGGTCACAAAGCCATCTTCCTTACTTTACTCCTAAACCACCTCAAGATAGTGCGGTTATCAAAGCTGGATATTG
TGTAAAACAAGGAGCAGTGATGAAAAACTGGAAGAGAAGATATTTTCAATTGGATGAAAACACAATAGGCTACTTCAAATCTGAACTGGTATGTTGTTAC
GTCATAAATGTTGCTATAAGAATGTTTGAAAAGTGTTGCAATGTAGTGATTATATATAATTTCTTGTACTGTTCTGTAGTTTCAGAATAAGTCTAGTTTT
TAGAGGTAAATATAGTTTATTTGGTTGTGATGCTTTTGGTTAATGATATTTTTCTTAAATACATTTTTAAGTAAAAAGATCCTATCTTCAAAGCAGCATT
CCACCTTGAAAGATCTGAAGATCTCAGAATCCTCTAGTCTATAAATTTCCTCTAAAGGGGCTGTCCTCTTGGGGGGTTAGCCCCACGTGGAGTAGGGAGA
GAAGGGCATCCACATGGGGAAGGGGTGGTGGCAGAGATGGGAGAATGGTCACATACACAGTGATTTATAAAATCAGGAACTATATTAAGTATAATAGAAG
CCAAGTCTTTTCAGAGAAACAATACTTTTTGGTGAATGAATGTATATCTGTATATATGATGAGGAATGAGATATTTACATAGTTTCAAAGTACCTATCTA
CTAAAATAGGTATTAAGTATTGTACAAGGGGAAAAAGAGTAACATTACAGTGAGGAAAGTGGTGTAAAGAATTCTGTCTGTAAAAGTCAATATTTAACCC
TCTGTATTTCTTTCTCTTGAGATTTTCTTTACCTATTTCACATTGACTCATAAATCACTTCACATAAGATGTTTTTATCTTCCCTGAAGGTAGAATCAGA
AATTGAAATTCCCTCTTCGCCTTGTTTGAGTTGCATCCTTATTTAAAATATTGTAGGGTGATCTGAGTCCTGAAATAGCTTATTGGAGACATTGAATGCA
ATTCTGTAGTATAAATGTCTATCCTACGTCTTCTTTTTGTATGGGATCTTTGAGAAGGGAACTTATACTTTGTTTGAATGAAGTCACCAGAACAGCATTG
TCCATTAGAACTTTCTGCACAAATGGAAATGTGCCGTATCTGTATTGTCCAAGGGCACTAGCTACATGTAGCTGTTGAGTGCTGGAAATGTGGCTAGTGT
GACTGAGGAACTGACTTAATTTCATTTTAATTAATTTATATTTACATCATTACACACAATGGCCACTGTATTGGCCAGCAGAGCACTAGTGTATAGGAAG
GGGATATTTTAAGATTCACCTCAGGAGTCAGCTCTTCTGGGAAGCTTTTAGACTCTGGGTTAAGTGTCTTCTCTTTATATGCCCTGTGGTACCCTATGCA
TACTTGTATCATAATGCTCTTCCCAGAGTTTTGCAATCACGTGCATTCTTGTCTTTGCAACTAAATTAAATGAGCTTCTTAAGGGTAAAGACTCTTGTAG
TCTTTTATGATCACAGGGCCTGGCACTTGATAGACAATAAGTGTCTTTGAATGAATGAAAAATGGCATAGCATAGCAAGAAATGCCATTTTAGTATGGGG
CTTTCTCAAAGCTTAAGAGCCTCAACTGGAAGTAGTAGTTACTTGGTTCAGAAAGTACCTGCCTTGTTGTCTCAGGAGGCTATCCTTGTGCTTGGTTAGC
AGGTTGTCTCATAGATTTTATTTAAAGCCAATACTCCCGGGAAGAGTCATTCATGCAGCAGACATTCATTGAGCTCTCCATGAACCTGGTGCACTGTTCT
GGGAACTGAAAATAAAAGAGAATAATTAGCAAAGTTCTCTGGCCTTCAGGAGTTCAGTTTTGGTGGGGAAATTGACGTGTGCCCCCATCATCAACAGTAG
TTTTAATAATTAGGAATATTTTTAGTATTTAGAAATTGCAGATAAAGCTGAAAACCTTTAAAGGTCAGTAATTATAACTATACTTAAGTTTTCCTAATTT
TACGGAGTATAGTTTATCTCCTATGGTAGTTCTTTGTTCTTCCTCTCAAATTTCACAGAATAATGCCCAGCATACAGGTTTTCAAAACTTAGTATTTCTG
TAATAGTTCTTGTTTCAGCTCCCCCTCCCCCAGTTTTAACATTTCTGAAATCTTAGCAGTATGTCTTAGAGTTGCTAAGGACGAGGGGCAGCCAGGCTGC
AGCTGTGCTGTAGTTGACTGCTTGCCATATGCACAGTACCTTTGGGTAAAATCCAGAAGACACCGGCATCAGCATGTGCAGAAAAGGGTGCTGGCAGCTT
GGGAGGAAATCTCAGGGACACCATGAAACATTCTTAAATACTGCATCACCAACACTCTTTTTGGCACAAAGAATGGCTTGGAGTGAAAAATATGGACATT
GGTGGCTCCAAGTCAAAAAGTGATTCAGAAGATCTGGAATCTGAATGTGAAATCTTAAAAACTATAACCAGTTTATCTTGTCTATATTTTTCTTTTTTAT
ATATGCTCAAGAATAATATATGATAAAAATGTTTAAAGTGTAAATGGGCTCTTTTATAAAACCTTTTCATCATGGAAAAGTGTAAACATACCCTTTTAGT
AGATAGAAATAATACATGGAACCTGCATATACCCATCACCTAGATGTCATAATTGTTAACACATGGCTCAGCTTGTCTTGTTTCTTCTGTTTCACCACCC
ACTTCCTGCTTCATATTTTGAGGCAAATCCTAGATGTCTCCCATTTCATCTGTAAATATCTCAGTGTGTATCTCTAAAAGATCATTTAAAAATTTTAAAA
ATAAGTATAAAAGACTTAAGTGCACAGCCGAAAAATTGGTGAAAATATTTGCAACATGTATTAGAGATAAAACTTACAAGGAATCTTAAAAACTGAGGGG
ATTTTTCCTCACCTACTTTGCTCTCTTTTCCTTCCATCAATCTGAAATGACTCAGACTCTAATTTATTAGGTGAGGCAAAGCAACATAGGCATCCAAGAG
GAACCAGTGTAGCTTTGTGTGGGTGTCAGAGCCCACGCAGGACAAGGAGGCTGTCCTCTTGGGGGGTTAGCCCCACGCGGAGTAGGGAGAGAAGGGCATC
CACATGGGGAGGGGTGGTGGCAGAGATGGGAGAATGGTCACATACACACTGATTGATAAAATCAAGAACTATATTAAGGATAATAGAAGCCAAATCTTGT
CAGAGAAACAATACTTTTTGGTGAATGGATGTATATCTGTATGTATGATGAGGAATGAAATATTTACATAGTTTCAAAGTACCTGTCTACTAAAATAGGT
ATTAAGTGTTGTACAAGGGGGAAAAGAATAACATTACAGTGAGGAAACCTGGCAGATACCACTTTACTCAGGTGGTCAGATGATTAAAGTGAATGTCATT
GGTAATGAGGTAAATTGAAATCACCTGACAGGATAGTGGAAGACGAAGACAGCATCACTTCTGTGAAATCCCTGCCCAAGGTATGTAATCAGAATCCCAT
CATGAGGCACACCCAAATGAGGGACATTCTACAAAATAACTACCTTGCAATCTTCATAGAGTGAAGATTATGAAAGTCAAGGAATAATGAGGAACTGTTC
CAGACTGAGGGAAAGAAAATATTTGACAAGCAGATGGTATTCGTGCTTCTGAACTGAATTCTTTTGCTCTAATAAAAGACATTTTGGGCACAGTTTTCTG
ATTCTGATGATTGTATTGTGATTATGTAAGAGAATGTAGGAAAAGTATTCAGGGGTAGTGTGGGACAGGTCAGCAACTCACTCTGAAATGGTTCAGGAAA
ATCAGTTCTTTATGCTGTATTTTCAATCCTTGTATAAATTCGTGTTTGTTTCAAAGATTAAAAAAAGAGAGAAAATGGAGGGGAAAATACCTGGTAGGCA
AATGAACAAAAGACATGAATAGGCAATTCATTTAAAAATTAAAATAGGTCTTAAAATATTTAAAAAAATTCAGCATCACTGATAATTAGAGAAATGCAAA
TTAAAACTGCAATGAAATATTCTCATCTGTCATGAGAAGGTTGTGGCTGAGTTAAGAGATTGGCAAATCCCCACCCACCCTGCCCAAAAGCAACTGTAAA
TGCCATTCTGTAAACAAAAGGAATCAGGAACCCTTGGTGATGTGACTGATTTCAGAGCTGGGGCAGATAAAGTACAAGCTGAGCTCAGAAAGTGAAGTTG
TGCCAGAGGATAAGGAAGTGGCTCAGAGAATGAATGGAACATGTCAAAAGGACACAGAAATTACCTTGAAGGAGCTGACCAAAATGCAGACAATTTAAAC
AACAAAATAAGTAATGATAGTAATGGAATATAACCCATAGAATAAAAATGAGTCATAAATAAATAAATGGAGAAGGAAAAATATTTCCTTAGAGTAAAAT
TCTATTTAATATATGTAGATGGATTGATGGGGTTAGAAAAATCACCATTTGGCAGCCACTAGTAATGGTTTCAGGCAGGAGTTTTCAGGGTTTGATAAAA
CTAGTTGCAAAATTATGATGGGAAACCTGGTATTACTATAGGTTCCAGGTATCTCCCCACAAGATACTTAACAGTGACAAAGGGAAAAAGTAATTTTACA
GCTACTGGCAAACATGACCTTAAGCAACAGATCAGGGTTAACACACCAGTGACAGGACAAGCCACCATCGGGTGTGTACCTCCTAATAGTGGTCCACTGA
GAAGAACAGTGTCATGTCTGTGGCTTCCTGTCAAAAGTGTATAAACTGAATCTCAGCACGAATAACAGGCAAACCCAGACTGGGAGGTGTTCTACAAAAA
TAACTGGCCTGCACTTCTTTAAACTCTGAAAAACGAATGAAGAACTATTCCACAGTTAAAGGCGACATGACAGCTACATACATGGTATGATCCTGGATTT
AACTCTGGATCAGAAAATGGTTTTTGTGCTGTAAAGAATACAGGTAGGGCAATTAATGAAATCTGAAGATGGTCTGTAGATTATAGTATTGCATCAGTGT
TGAGTTTCCAGTTTTCATAATTGCACTGTGGTTATGCAAGAGCACATCCATGTTTTAGGAAATACACACTGAAGCGTTTAGTAAAGGTACATCATATTTA
CAACTTAACCTTCAAGCATTTCAGGAATCTATATATATACATATACTCTGTCACACACATATATAAACATAAACAGATAATGATAAAGCAAATGTAAAAT
ATCAACAGTTTAGAAAACAAGGTGTAGGTTATGCAGAAATTCTTTGTACTGTTTTTCTCAGTCTCTTATTAAGTGTGAAATTATTTCAAAATTAAACTAT
TTTGTAAAACTTTTTAAAAAAGATCTATGATTTTTTTTTTTTTTTTTAAAAAAGCACTCCCAGCTGGGCGTGGTGGCTCACGCCTGTAATCCTAGCATTT
TGGGAGGCCAAGGTGGGCAGATCACCAGAGGTCAGGAGTTTGAGACCAGCCTAGCCAACATGGTAAAACCCCATCTCTACTAAAAGTACAAAAATTAGCT
GGGCGTGGTGGCAGGCGCCTGTAATTTCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCAAGATCG
TACCATTGCACTCTAGCCTGGGCAACAAGAGCGAAACTCCATCTCAAAAAAAAAAAAAACAAAAAAAACAACAACACTCTGTCATGGTTTAGTTTTATTT
TTGGTGCTACATAAAGTAATGGTATGTCTTAATCTCACGCTGTCATATTCAATGAAATATGTATATTGTATTTTATGGAATGTATACTAGAAATATGCTA
TTAGGAACCAGTTTTATATTTGTATCTTATATCTACTTTGTAACCTTGGGTGAGATACTTAACATGTCTAATCTGCAGTTTCAGCACATGAATAGTAGTA
CATGTGTTGTAGGGTTGGGGAAAGTGTGAGATAAAACATTTAAAAGCTAGCAGATGTCTCAGCACTTAGTAAACATTCAATTTTGTATTTATATAAAAGT
GATATTTGTAAAATCACAAATTTAAGTCAAAGAAGCAGGATGTGCACTTGCTCTGCTGCCTTGTATATCAAAGTGACATTCCAGAAAAGGAGATGCTGTG
CATACTGGTACGTGGGTCCGTCGGGGAAAGTCTGATGGCTAATAGCTTTTAATTAGTTACACTGCCCTTAAGGCCAGAAATAATGTGAATAAGGGCCGTA
TGCAGTTTTTCTTGTTTCAAACAACAGTGTATATAAGGTTATAGTGTTTGAGCTATTCAGATGCTGGATGGTTTAAGAAGGTAGATTTATTTCTGAGATG
TGCTTCAGAAAAGAAGTGTGATTTTCACATGGGTCTTCAAATAAGACAGCTAACCTTTGAAAGGATTTTAAGAATAAACATCATGTAACTGTTTTTTTTT
TTTTTTTTTTTTTGCCAGGAAAAGGAACCTCTTCGTGTAATACCACTTAAAGAGGTTCATAAAGTCCAGGAATGTAAGCAAAGCGACATAATGATGAGGG
ACAACCTCTTTGAAATTGTAACAACGTCTCGAACTTTCTATGTGCAGGTAAGATGCTTATTTGGCAATTAATAGATCCTCCTAAAAAGAAATTAATAATA
TTAGAGGTGAAATAAACATAAACAAGCTTGTTGCACTTGAGGTTAAAAAAATATGACAACTGTAATTCACCAGCTTAATAAAAGGGTACTGTATATAGAG
TTATTGGTGGGGTTATATGTTCAGGAAGTGGGAGTATTTGTTATGAATTAGTGAACTAGAACTAAGTATTTAGAGAAAGGGAAATGCTTTTAATTTAGAT
GTTAAGTGTGTACTTTCAAGTTGGATTATTTTTGCACATGTTTTAGAATTTTGATTTTTCTATTATATCATTTTTTGGTAACCTTATTAAAAAAACCCAT
AGTAAAAGTAGACAGTAGATTTATATAGTTTCACTAATAGTAGGCATCCTGTATTTAAGTTTAAATTGTACTTTTTGCATACTTCATTGAATTATTTAAA
TGGAAAATTTTAAAAAAAGATTTGGGCCGGCTGTGTTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCACATCGCTTGAGTCCAGGA
GTTCGAGACCAGCCTGGGCAACATGGCAAAACCCCATCTCTACTAAAAATACAAACATTAGCCAGCCGTGGTGGTGTGCAGGCTTGTAATCCTAGCAACT
TGGGAGGCTGAGGCACGAGAATCGCTTGAACCCAGGAGGTGGTTACAGTGAGCTGAGATCGTGTTACTGCACTCCAGCCTGGGTGACAGAGACCCTGTCT
CAAAAAAAAAAAAAAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00249092

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.