Detailed information on ENST00000481729

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00138868 WD repeat containing planar cell polarit... novel protein coding ENST00000481729 578 243 UTR3 Trans
TCONS_00138868 WD repeat containing planar cell polarit... novel protein coding ENST00000481729 571 243 UTR3 Trans

Sequence

>ENST00000481729 (634 nt)
ACAGCTTCAGAAAACCATGCAAGAATTAGAGCTGGTTAAAAAGGATGCCCAACAAACCACATTGATGAATATGGAAATAGCTGATTATGAACGTTTGATG<br />AAAGAACTAAATCAAAAGTTAACTAATAAAAACAACAAGATAGAAGATTTGGAGCAAGAAATAAAAATTCAAAAACAGAAACAAGAAACCCTACAAGAAG<br />AAATAAGTGAGTTAAAGAAAATTCACTTTACTTTTTAATTATTTCATCATAACAACTTGATTTGGTGGGGGGCATTACTTGTTTATTTCACCAGTCTTTC<br />ACTGTCAGTCAGGTGTTTAACACAGTGATAAATGTTACTGGGGACCCAGAATGGGTGTAAAACTGTTTGCCATTAAGTTGTTTGTAGTCCATGCCTATGT<br />CCTGAATGGTAATGCCTAGGTCTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTAAATCTTTAATCCATCTTGAATTGATTTTTGTATAAGGTGT<br />AAGGAAGGGATCCAGTTTCAGCTTTCTACATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCA<br />GGTTTGTCAAAGATCAGATAGTTGTAGGTATGCG

Expression



Full and truncated open reading frames discovered in ENST00000481729

In silico ORF/peptide predictions
>peptide 1 (78 aa)
QLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEISELKKIHFTF


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT073103 (Evalue: 0)

Best hit to Swiss-Prot:
sp|O00370|LORF2_HUMAN (Evalue: 6.0E-47)