Detailed information on ENST00000483065

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000379565 ribosomal protein S6 kinase, 90kDa, poly... protein coding ENST00000483065 575 314 UTR3 Trans
TCONS_00037377 NAD synthetase 1 novel protein coding ENST00000483065 518 302 UTR3 Trans
TCONS_00148048 potassium voltage-gated channel, subfami... novel protein coding ENST00000483065 547 296 UTR3 Trans
TCONS_00200504 Rho GTPase activating protein 26 novel protein coding ENST00000483065 511 308 UTR3 Trans
TCONS_00226753 cell division cycle associated 7-like novel protein coding ENST00000483065 539 306 UTR3 Trans

Sequence

>ENST00000483065 (577 nt)
TTTATGCCACCATACTTGTTTCCCCTGTTCATCTTATTTTGAACAATTAGAAAACTCTGGCAAGTACTTTTTGTTTTATTTTATTTTTTATTTTTTTGAG<br />ACAGTCTCTCACTCCGTCACCCAGTCTGGAATATAGTGGCGCCATCTCAGCTCACTGCAACCTCTACCTCCCAAGTTCAAGCAGTTCTCATGCCTCAGCC<br />TCCTGAGTAGCTAGAATTACAGGCGCCCACCACCAGGCCTGGCTAATTTTTATATTTTTATTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCG<br />AACTCCTGGCCTTAAGTAATCCGCCTGCCTCAGCCTCCCAAATTGCTAGGATTACAGGCATGAACCACCGTGCCCGGCCTCTGGCAATAAAATAAAATAT<br />TTTATTGACTTTCAGGAGATTCCAGGTATCCATTACTTGGCCAGCCACTGCAGTACAATCCTCCTGCTGTTCTGCACGGACACATTCCAAACCAACAGGG<br />TCAGCCTGGCAGCAGGCATGGAAACCGAGGAAGGAGACAAGCTAAAAAAGCTGCATCCACAGACCTTGGAGCAGGAG

Expression



Full and truncated open reading frames discovered in ENST00000483065

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT074599 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q15032|R3HD1_HUMAN (Evalue: 1.0E-28)