Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
---|---|---|---|---|---|---|---|---|
ENST00000379565 | ribosomal protein S6 kinase, 90kDa, polypeptide 3 | protein coding | ENST00000483065 | 575 | 314 | UTR3 | Trans | |
TCONS_00037377 | NAD synthetase 1 | novel protein coding | ENST00000483065 | 518 | 302 | UTR3 | Trans | |
TCONS_00148048 | potassium voltage-gated channel, subfamily G, member 3 | novel protein coding | ENST00000483065 | 547 | 296 | UTR3 | Trans | |
TCONS_00200504 | Rho GTPase activating protein 26 | novel protein coding | ENST00000483065 | 511 | 308 | UTR3 | Trans | |
TCONS_00226753 | cell division cycle associated 7-like | novel protein coding | ENST00000483065 | 539 | 306 | UTR3 | Trans |
>TCONS_00226753 (576 nt)
TTTATGCCACCATACTTGTTTCCCCTGTTCATCTTATTTTGAACAATTAGAAAACTCTGGCAAGTACTTTTTGTTTTATTTTATTTTTTATTTTTTTGAG
ACAGTCTCTCACTCCGTCACCCAGTCTGGAATATAGTGGCGCCATCTCAGCTCACTGCAACCTCTACCTCCCAAGTTCAAGCAGTTCTCATGCCTCAGCC
TCCTGAGTAGCTAGAATTACAGGCGCCCACCACCAGGCCTGGCTAATTTTTATATTTTTATTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCG
AACTCCTGGCCTTAAGTAATCCGCCTGCCTCAGCCTCCCAAATTGCTAGGATTACAGGCATGAACCACCGTGCCCGGCCTCTGGCAATAAAATAAAATAT
TTTATTGACTTTCAGGAGATTCCAGGTATCCATTACTTGGCCAGCCACTGCAGTACAATCCTCCTGCTGTTCTGCACGGACACATTCCAAACCAACAGGG
TCAGCCTGGCAGCAGGCATGGAAACCGAGGAAGGAGACAAGCTAAAAAAGCTGCATCCACAGACCTTGGAGCAGGAG
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.