Detailed information on ENST00000484171

lncRNA-RNA interactions

Number of interactions: 13

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000389534 zinc finger protein 841 protein coding ENST00000484171 557 269 UTR3 Trans
ENST00000426391 zinc finger protein 841 protein coding ENST00000484171 557 269 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate red... processed transcript ENST00000484171 515 284 noncoding Trans
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript ENST00000484171 554 281 noncoding Trans
ENST00000513000 inositol polyphosphate-4-phosphatase, ty... protein coding ENST00000484171 514 263 UTR3 Trans
ENST00000560870 sense_intronic sense intronic ENST00000484171 533 262 noncoding Trans
ENST00000594295 zinc finger protein 841 protein coding ENST00000484171 557 269 UTR3 Trans
TCONS_00011355 5-methyltetrahydrofolate-homocysteine me... novel protein coding ENST00000484171 613 283 UTR5 Trans
TCONS_00011358 5-methyltetrahydrofolate-homocysteine me... novel protein coding ENST00000484171 613 283 UTR5 Trans
TCONS_00135644 zinc finger protein 841 novel protein coding ENST00000484171 557 269 UTR3 Trans
TCONS_00204911 erythrocyte membrane protein band 4.1 li... novel noncoding ENST00000484171 608 282 noncoding Trans
TCONS_00204916 erythrocyte membrane protein band 4.1 li... novel protein coding ENST00000484171 608 282 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000484171 629 280 UTR5 Trans

Sequence

>ENST00000484171 (1208 nt)
GGGGTAGTGGCAAGGTGGCCAGAGCAATTGACTGGGAGCTGGGAACAGGAATGAAGAGGAAGAGCTGATAAGAAACATGCCCAGAGCAGATTTGATGCTA<br />CTGCCAATGTACCTGAATAAGAAGACAACTCTTTCTGGAAAAAGGGAAAACTTGAAGGGCTATTGAAGGCCGCTAGAAAGATGGAGTTTCACTCTTGTCG<br />CCCAGGATGGAGTACAATGGCATGATCTTGGCTCACTGCAACCTCTGCTTCCAGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGGTGGGCTTA<br />TAGGTGCCCGCCATGATGCCCAGCTAATTTTTGTTTCATTAGTACAAATAGGGTTTCACTATGTCGGCCAGGCTTGTCTCGAATTCCTGACCTCAGGTGA<br />TCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAACCACCGTGCCCGGTTTGAGTAACCTTTAAGTAAGAAAGTGCCTTTTGGGTTGAGT<br />TTAACAATTTCCATGGTAGAGAGTCTCTTCTGCTATATGCTGTTTACTTAGCTTCTGCCTAGTATATGCAGCAGCAGAAAATGGTTTCCCTTGTTGTAGG<br />TCTAATGAGATTTAGAACACTTTGGGTCCTCAGATATAGTGAGCAAGATTTTCACTTCATAGATGAAGGAACTGCAGCCTAAAGAATTGGGAAGAAAAGG<br />TTTATCCAGGCTTGCTGTGCATTCCTTCCTTTCTCTGGGAATTCCCTTGGAGAAGAAATCTGGCTGATCAAATCTCCTTGTAAACATGCTGTGAAGACTC<br />TGGGGAAAACCACTAATGATATTTGTTAGTGGCAGTCTTTATCTTTGAGAGACTTTTAGCAGCATGAACCTTACCCCCGTAGTAGAATTGTATATGGTAA<br />ACAAACCTGGAATCTAAGGATTCATGGGTAATGGCTTCTTGAAAAGTGTCAAGTAAGCTATGTAACTATGGCAGGAGATGGAACTACTTCAGGGTTAAAA<br />AAGCTGGCTTTCATTTCGTGCAAGTAATGTACTTGTGTACATCTTTTGGAGAACCATATGTTAAATCCGAATCAGACCAAGTCCTAATGTGGTAAGAAAA<br />GGGCTGTGGAGTAGTATTGGCAGTCCTGGGCTTTTCCCTATGTTCCCTGTACCTTGTGATTACTTATAGCTTTGACATTATTAGTAAAGTTTGATACTTG<br />GTAAAATA

Expression



Full and truncated open reading frames discovered in ENST00000484171

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT134411 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8N2A0|CX062_HUMAN (Evalue: 5.0E-23)