Detailed information on ENST00000484365

lncRNA-RNA interactions

Number of interactions: 149

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000227155 CD82 molecule protein coding ENST00000484365 631 296 UTR3 Trans
ENST00000323816 growth arrest-specific 7 protein coding ENST00000484365 611 289 UTR3 Trans
ENST00000327473 tumor necrosis factor, alpha-induced protein 8-like 1 protein coding ENST00000484365 620 230 UTR3 Trans
ENST00000353047 cathepsin B protein coding ENST00000484365 610 278 UTR3 Trans
ENST00000373857 platelet-activating factor receptor protein coding ENST00000484365 607 288 UTR3 Trans
ENST00000380641 centlein, centrosomal protein protein coding ENST00000484365 667 291 UTR3 Trans
ENST00000410023 interleukin 1 receptor, type I protein coding ENST00000484365 596 294 UTR3 Trans
ENST00000437099 growth arrest-specific 7 protein coding ENST00000484365 611 289 UTR3 Trans
ENST00000439138 transmembrane protein 98 protein coding ENST00000484365 551 292 UTR5 Trans
ENST00000442007 antisense antisense ENST00000484365 620 259 noncoding Trans
ENST00000448214 antisense antisense ENST00000484365 686 306 noncoding Trans
ENST00000463496 aryl hydrocarbon receptor nonsense mediated decay ENST00000484365 599 290 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000484365 653 277 noncoding Trans
ENST00000490103 THO complex 5 protein coding ENST00000484365 521 284 UTR3 Trans
ENST00000524750 CD82 molecule protein coding ENST00000484365 523 231 UTR3 Trans
ENST00000533870 SRY (sex determining region Y)-box 6 retained intron ENST00000484365 604 247 noncoding Trans
ENST00000539896 platelet-activating factor receptor protein coding ENST00000484365 607 288 UTR3 Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding ENST00000484365 668 280 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding ENST00000484365 684 292 UTR3 Trans
ENST00000560870 sense_intronic sense intronic ENST00000484365 535 260 noncoding Trans
ENST00000620788 pleckstrin homology-like domain, family B, member 1 retained intron ENST00000484365 737 292 noncoding Trans
TCONS_00001821 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000484365 704 293 UTR3 Trans
TCONS_00001823 low density lipoprotein receptor adaptor protein 1 novel protein coding ENST00000484365 704 293 UTR3 Trans
TCONS_00004719 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 novel protein coding ENST00000484365 614 290 UTR3 Trans
TCONS_00004721 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 novel protein coding ENST00000484365 614 290 UTR3 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000484365 654 292 UTR3 Trans
TCONS_00013935 platelet-activating factor receptor novel protein coding ENST00000484365 607 288 UTR3 Trans
TCONS_00020768 processed_transcript novel protein coding ENST00000484365 610 295 UTR5 Trans
TCONS_00022048 lincRNA novel protein coding ENST00000484365 566 234 UTR3 Trans
TCONS_00023682 pre-mRNA processing factor 18 novel protein coding ENST00000484365 610 281 UTR3 Trans
TCONS_00023685 pre-mRNA processing factor 18 novel protein coding ENST00000484365 610 281 UTR3 Trans
TCONS_00023687 pre-mRNA processing factor 18 novel protein coding ENST00000484365 610 281 UTR3 Trans
TCONS_00023689 pre-mRNA processing factor 18 novel protein coding ENST00000484365 610 281 UTR3 Trans
TCONS_00027924 ADARB2 antisense RNA 1 novel protein coding ENST00000484365 602 297 UTR5 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000484365 625 289 UTR3 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000484365 672 292 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000484365 661 289 UTR3 Trans
TCONS_00030165 antisense novel protein coding ENST00000484365 686 306 UTR5 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000484365 610 295 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000484365 646 298 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000484365 679 293 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000484365 668 298 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000484365 646 298 UTR3 Trans
TCONS_00033132 dynein heavy chain domain 1 novel protein coding ENST00000484365 632 291 UTR5 Trans
TCONS_00034642 CD82 molecule novel protein coding ENST00000484365 631 296 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000484365 631 296 UTR3 Trans
TCONS_00037377 NAD synthetase 1 novel protein coding ENST00000484365 624 294 UTR3 Trans
TCONS_00039782 GRAM domain containing 1B novel protein coding ENST00000484365 638 292 UTR5 Trans
TCONS_00041296 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000484365 633 291 UTR3 Trans
TCONS_00041298 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000484365 633 291 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000484365 684 292 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000484365 582 234 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000484365 637 287 UTR3 Trans
TCONS_00057601 transcribed_unprocessed_pseudogene novel protein coding ENST00000484365 624 292 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000484365 675 295 UTR3 Trans
TCONS_00075840 forkhead box N3 novel protein coding ENST00000484365 673 292 UTR3 Trans
TCONS_00075840 forkhead box N3 novel protein coding ENST00000484365 606 276 UTR3 Trans
TCONS_00075841 forkhead box N3 novel protein coding ENST00000484365 673 292 UTR3 Trans
TCONS_00075841 forkhead box N3 novel protein coding ENST00000484365 606 276 UTR3 Trans
TCONS_00075844 forkhead box N3 novel protein coding ENST00000484365 545 291 UTR3 Trans
TCONS_00075845 forkhead box N3 novel protein coding ENST00000484365 545 291 UTR3 Trans
TCONS_00076763 protein phosphatase 1, regulatory subunit 13B novel protein coding ENST00000484365 630 291 UTR3 Trans
TCONS_00090929 nucleoporin 93kDa novel protein coding ENST00000484365 617 290 UTR3 Trans
TCONS_00090941 nucleoporin 93kDa novel protein coding ENST00000484365 617 290 UTR5 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding ENST00000484365 684 292 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding ENST00000484365 684 294 UTR3 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000484365 637 293 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000484365 637 293 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000484365 622 291 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000484365 603 293 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000484365 603 293 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000484365 636 292 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000484365 636 292 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000484365 636 292 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000484365 636 292 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000484365 636 292 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000484365 636 292 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000484365 636 292 UTR5 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding ENST00000484365 620 292 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000484365 632 287 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000484365 626 295 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000484365 608 293 UTR3 Trans
TCONS_00119049 GRB2 associated, regulator of MAPK1 novel protein coding ENST00000484365 640 293 UTR3 Trans
TCONS_00123889 ribosomal protein SA pseudogene 58 novel protein coding ENST00000484365 605 264 UTR5 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding ENST00000484365 605 264 UTR5 Trans
TCONS_00133831 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) novel protein coding ENST00000484365 639 296 UTR3 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding ENST00000484365 633 291 UTR3 Trans
TCONS_00142157 LY6/PLAUR domain containing 6B novel noncoding ENST00000484365 622 290 noncoding Trans
TCONS_00142157 LY6/PLAUR domain containing 6B novel noncoding ENST00000484365 717 288 noncoding Trans
TCONS_00142168 LY6/PLAUR domain containing 6B novel protein coding ENST00000484365 717 288 UTR3 Trans
TCONS_00142168 LY6/PLAUR domain containing 6B novel protein coding ENST00000484365 622 290 UTR3 Trans
TCONS_00142174 LY6/PLAUR domain containing 6B novel protein coding ENST00000484365 622 290 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000484365 699 290 UTR3 Trans
TCONS_00165085 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000484365 605 286 UTR3 Trans
TCONS_00165085 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000484365 652 289 UTR3 Trans
TCONS_00165089 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000484365 605 286 UTR3 Trans
TCONS_00165089 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000484365 652 289 UTR3 Trans
TCONS_00165090 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000484365 605 286 UTR3 Trans
TCONS_00165090 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000484365 652 289 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000484365 642 291 UTR5 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000484365 636 293 UTR5 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000484365 649 288 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000484365 680 290 UTR5 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000484365 657 295 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000484365 628 292 UTR5 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000484365 675 290 UTR3 Trans
TCONS_00192322 tec protein tyrosine kinase novel protein coding ENST00000484365 680 293 UTR5 Trans
TCONS_00192331 tec protein tyrosine kinase novel protein coding ENST00000484365 635 301 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000484365 655 291 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000484365 655 291 UTR5 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000484365 604 290 UTR3 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000484365 667 294 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000484365 617 283 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000484365 604 290 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000484365 667 294 UTR3 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding ENST00000484365 605 275 UTR3 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding ENST00000484365 710 291 UTR3 Trans
TCONS_00200504 Rho GTPase activating protein 26 novel protein coding ENST00000484365 615 292 UTR3 Trans
TCONS_00210637 polymerase (DNA directed), eta novel protein coding ENST00000484365 572 294 UTR3 Trans
TCONS_00210928 leucine rich repeat containing 1 novel protein coding ENST00000484365 719 292 UTR3 Trans
TCONS_00213182 tubby like protein 4 novel protein coding ENST00000484365 625 292 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding ENST00000484365 609 288 UTR5 Trans
TCONS_00213738 enoyl-CoA delta isomerase 2 novel protein coding ENST00000484365 617 295 UTR3 Trans
TCONS_00219453 WD repeat domain 27 novel protein coding ENST00000484365 609 294 UTR3 Trans
TCONS_00219453 WD repeat domain 27 novel protein coding ENST00000484365 602 281 UTR3 Trans
TCONS_00222403 protein tyrosine phosphatase, non-receptor type 12 novel protein coding ENST00000484365 635 295 UTR5 Trans
TCONS_00222619 carnitine O-octanoyltransferase novel protein coding ENST00000484365 601 296 UTR5 Trans
TCONS_00226753 cell division cycle associated 7-like novel protein coding ENST00000484365 642 300 UTR3 Trans
TCONS_00227594 GLI family zinc finger 3 novel protein coding ENST00000484365 511 211 UTR3 Trans
TCONS_00230811 kielin/chordin-like protein novel protein coding ENST00000484365 684 291 UTR3 Trans
TCONS_00235281 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 novel protein coding ENST00000484365 668 293 UTR5 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000484365 737 288 UTR5 Trans
TCONS_00237101 cathepsin B novel protein coding ENST00000484365 610 278 UTR3 Trans
TCONS_00237103 cathepsin B novel protein coding ENST00000484365 610 278 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000484365 647 291 UTR3 Trans
TCONS_00243475 osteoclast stimulating factor 1 novel protein coding ENST00000484365 660 273 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000484365 714 289 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000484365 714 289 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000484365 660 273 UTR5 Trans
TCONS_00243489 proprotein convertase subtilisin/kexin type 5 novel protein coding ENST00000484365 613 291 UTR3 Trans
TCONS_00245543 long intergenic non-protein coding RNA 963 novel protein coding ENST00000484365 632 294 UTR3 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 novel protein coding ENST00000484365 613 290 UTR3 Trans
TCONS_00247297 family with sequence similarity 166, member B novel protein coding ENST00000484365 691 290 UTR5 Trans
TCONS_00247576 contactin associated protein-like 3 novel protein coding ENST00000484365 688 294 UTR3 Trans
TCONS_00247576 contactin associated protein-like 3 novel protein coding ENST00000484365 622 280 UTR3 Trans
TCONS_00247594 contactin associated protein-like 3 novel protein coding ENST00000484365 688 294 UTR3 Trans
TCONS_00247594 contactin associated protein-like 3 novel protein coding ENST00000484365 622 280 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000484365 601 292 UTR5 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000484365 733 292 UTR5 Trans

Sequence

>TCONS_00252827 (1764 nt)
CAACAAAAGCTCTTTGAGATCGTCAATAATTCTTTTAAGTATAAGGGATCCCTAGACCAAATGATCTGAGAACTGCTGGTCTAGGGGAAGATGATGGTAC
CTAAGTGAAAGCTCTCAGGTTCCACTTGTGCTCAAGTTCTGCCTTTTCAGTCCTCTCTGTTTTACCTGGTTCCTTATTATCTCTGGACTTCTGTTATGAA
CATGATATTACCATTAATTATGAAACTTAATCATATATTCATATATTAGTTTATGGTATCTTTTTTTTTTTAAGACAGAGTCTTGCTCTGTCGCCAGGCT
GGAGTGCGGTGGCATGATCTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCG
AGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCGTGATCTGCCCGCC
TCGGCCTCCCAAAATGCTGGGATTACAGGCCTGAGCCACCATGCCTGGCCTATGGTATCTCTTAATGGATTGAGGTATATACATATTTTATATTATTTCT
TCAACTACTTTGCATGTCTAGAGTACAGACATTTTTATATTTTCTTTTTTTTTTTTTTTAAACCTCAGAATCTAGTATATAGAGATTGTACATTAGAATG
GATTTTTGCTGAATAAAACCAATTCTGATCTTCCCTCTTAGACACAGAATTCCAGAGTGGAAAGGGCTTTTGGGCATCAATCCAGTTTGGCCATTTCATT
TCATAGATGAGGAAGCAGAAGTCTGGTTCTCAAGAAGCCTTGTCCAAGGTCGTGCAGCTTTTGTTACTAGAAAATTAAGTCCTAGGTCCTTTCCAGTATA
CTTCCCACCTCATCTTTTTCTTTTAGCACATTTATTAAGGGTGAACTAATAATGAATTAAGGCATAATATTAGGTTGAAGTAAAGCAACCCAGTCTTGTG
TCTTAAATTATTATTATCGCAAATCATATTTTCCAGTATGCTCTTTTACTTTTCAAATGATAGCGTCATGTGTATTTGTGAAGTGGAAGTTTTATATTGA
ACAGATACGGACATTGGCACAGTGTTGTATTCCTGAGTTTGTATGGAAAGTTAACTCAAAGGAGAATGCAGTGGTTTCAATCATGGTTTAATATTTGTGT
TGGTTTTCCTAAGATGAATGGTGGGCTTTCCCCTGCCCAAGCCATTTACCATTTACCAGCAGAGTCATGAATTTGAGGTCCCGTTTTGATTGACTTCTTC
ATTAGAGCATTTAAAATATTACTTTCTTTCTAGGGTCCAAATTCCAAGCCTGTAGTGTCCTTCATTGCTGGTTTAACTGCTCCTCCTGGGAGAAGAATGG
GTCATGCCGGGGCAATTATTGCTGGAGGAAAAGGTGGAGCTAAAGAGAAGATCTCTGCCCTTCAGAGTGCAGGAGTTGTGGTCAGTATGTCTCCTGCACA
GCTGGGAACCACGATCTACAAGGAATTTGAAAAGAGGAAGATGCTATGAAAGAAAAAAAAAATTCCTAAAACTGTGGAATGGATCACGTAGACATGTAAC
CCAGCAGCAGTTTGCTTCTGTTGTCCACTGATTAATCAGCCTATGTGCCTGACACTGGTCTTGCAGTACAACTGGAAGCCAAAACAAGGTGGAAGATGTC
CTGAATTAAGATGTTTTCACCACATTGTATTACAGAGACAGCCAATAAATCTACTATTTGATTTC

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.