Detailed information on ENST00000484377

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000290219 interferon gamma receptor 2 (interferon ... protein coding ENST00000484377 936 319 CDS Cis
ENST00000381995 interferon gamma receptor 2 (interferon ... protein coding ENST00000484377 936 319 CDS Cis
ENST00000405436 interferon gamma receptor 2 (interferon ... protein coding ENST00000484377 936 319 CDS Cis
ENST00000421802 interferon gamma receptor 2 (interferon ... protein coding ENST00000484377 936 319 CDS Cis
ENST00000545369 interferon gamma receptor 2 (interferon ... nonsense mediated decay ENST00000484377 936 319 UTR3 Cis
TCONS_00161618 interferon gamma receptor 2 (interferon ... novel protein coding ENST00000484377 936 319 CDS Cis

Sequence

>ENST00000484377 (695 nt)
AATGGTGGCTGTTTTTTTCTATTTCTGACTCTGCCATGAATTTTTTTTTTTTTTTTTAAAGACAATATCTCACTCTGTTGCCTAGGCTGGAGTGCAGTGG<br />TGCAACCACAGCTCACTGCACCTTCAAATGCTGGAGCTCAGGCAATCCTCTTACCTCCGCTTTCCAAGCAGCTGGGACCACAGATGTATCCTCCACTCCT<br />CGCTGGCCACCATCCTGCTGCCCAACAGAAGAAGCTCTTCTGTCTCCGATTTCCTGAACGGTCTAAGGGAGCCAGTGGGCTAGGCCCATGCTTTGGTTCA<br />AAGCGTTTGGAGAACATCTTCTTGCTCCTTTTCCGGAAACGAGATAATGGACACAGAGTCCCAGACGTCATCCTTTGGACCAGGAAGAAACAGGCTCCTG<br />CCAGCACCGACAGCAACGAAAATGTTCCCACGGAGATCAGGATGACTTGCTGAAGCTCAGTGGAGGCTAAAAAGAGGACACGAAAGTGAACAGAATGATC<br />TTCCTACGCACAACACAAACATCAGTTAATGTTCCATCCATGCTGCTTAAAGAGCATTCCTGTCCTAGTAAAATGGGCAAGTCCCTCTACCCCCCACCCT<br />CACCTGGTATGCTTACATTAATAGCTAAAGTCAATCCTGTAATGAAATAAAGCAAGTGGTAGCTGTCTGGTAGCCTCCACTACTGCAAATCTCAG

Expression



Full and truncated open reading frames discovered in ENST00000484377

In silico ORF/peptide predictions
>peptide 1 (89 aa)
MYPPLLAGHHPAAQQKKLFCLRFPERSKGASGLGPCFGSKRLENIFLLLFRKRDNGHRVPDVILWTRKKQAPASTDSNENVPTEIRMTC

>peptide 2 (51 aa)
MLELRQSSYLRFPSSWDHRCILHSSLATILLPNRRSSSVSDFLNGLREPVG

>peptide 3 (51 aa)
MIFLRTTQTSVNVPSMLLKEHSCPSKMGKSLYPPPSPGMLTLIAKVNPVMK


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT081782 (Evalue: 0)

Best hit to Swiss-Prot:
sp|P38484|INGR2_HUMAN (Evalue: 7.0E-9)