Detailed information on ENST00000484380

lncRNA-RNA interactions

Number of interactions: 88

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000242057 aryl hydrocarbon receptor protein coding ENST00000484380 544 295 UTR3 Trans
ENST00000257189 desmoglein 3 protein coding ENST00000484380 582 312 UTR3 Trans
ENST00000309060 zinc fingers and homeoboxes 3 protein coding ENST00000484380 612 298 UTR3 Trans
ENST00000338983 Mitogen-activated protein kinase kinase kinase MLT protein coding ENST00000484380 579 309 UTR3 Trans
ENST00000379565 ribosomal protein S6 kinase, 90kDa, polypeptide 3 protein coding ENST00000484380 666 308 UTR3 Trans
ENST00000389534 zinc finger protein 841 protein coding ENST00000484380 546 268 UTR3 Trans
ENST00000421422 zinc fingers and homeoboxes 3 protein coding ENST00000484380 612 298 UTR3 Trans
ENST00000424496 sense_intronic sense intronic ENST00000484380 623 283 noncoding Trans
ENST00000426391 zinc finger protein 841 protein coding ENST00000484380 546 268 UTR3 Trans
ENST00000463496 aryl hydrocarbon receptor nonsense mediated decay ENST00000484380 544 295 UTR3 Trans
ENST00000463899 N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase) processed transcript ENST00000484380 505 295 noncoding Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000484380 590 279 noncoding Trans
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript ENST00000484380 571 301 noncoding Trans
ENST00000543196 polypeptide N-acetylgalactosaminyltransferase 6 protein coding ENST00000484380 517 306 UTR3 Trans
ENST00000594295 zinc finger protein 841 protein coding ENST00000484380 546 268 UTR3 Trans
ENST00000607772 CNKSR family member 3 protein coding ENST00000484380 602 313 UTR3 Trans
ENST00000607772 CNKSR family member 3 protein coding ENST00000484380 566 304 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000484380 669 321 UTR3 Trans
TCONS_00000720 lincRNA novel protein coding ENST00000484380 509 309 UTR3 Trans
TCONS_00001594 lincRNA novel protein coding ENST00000484380 612 307 UTR5 Trans
TCONS_00004719 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 novel protein coding ENST00000484380 621 302 UTR3 Trans
TCONS_00004721 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 novel protein coding ENST00000484380 621 302 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000484380 659 307 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000484380 604 299 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000484380 615 300 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000484380 671 306 UTR3 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding ENST00000484380 606 302 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000484380 606 302 UTR5 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000484380 614 300 UTR3 Trans
TCONS_00076763 protein phosphatase 1, regulatory subunit 13B novel protein coding ENST00000484380 630 295 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000484380 530 285 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding ENST00000484380 604 288 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000484380 604 288 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000484380 604 288 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000484380 604 288 UTR3 Trans
TCONS_00104960 A kinase (PRKA) anchor protein 1 novel protein coding ENST00000484380 598 304 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000484380 582 312 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000484380 616 301 UTR3 Trans
TCONS_00116669 desmoglein 3 novel protein coding ENST00000484380 582 312 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000484380 614 309 UTR5 Trans
TCONS_00125901 zinc finger protein 226 novel protein coding ENST00000484380 553 304 UTR3 Trans
TCONS_00125904 zinc finger protein 226 novel protein coding ENST00000484380 553 304 UTR3 Trans
TCONS_00135644 zinc finger protein 841 novel protein coding ENST00000484380 546 268 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000484380 615 300 UTR5 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000484380 615 300 UTR5 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000484380 615 300 UTR5 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000484380 604 300 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000484380 671 309 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding ENST00000484380 671 309 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding ENST00000484380 604 300 UTR5 Trans
TCONS_00147115 ATPase family, AAA domain containing 2B novel protein coding ENST00000484380 671 309 UTR3 Trans
TCONS_00148048 potassium voltage-gated channel, subfamily G, member 3 novel protein coding ENST00000484380 637 294 UTR3 Trans
TCONS_00149280 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000416453} novel protein coding ENST00000484380 653 299 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000484380 613 304 UTR3 Trans
TCONS_00161482 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding ENST00000484380 654 308 UTR3 Trans
TCONS_00163095 T-cell lymphoma invasion and metastasis 1 novel protein coding ENST00000484380 550 301 UTR3 Trans
TCONS_00165085 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000484380 610 296 UTR3 Trans
TCONS_00165089 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000484380 610 296 UTR3 Trans
TCONS_00165090 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000484380 610 296 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000484380 610 297 UTR5 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000484380 607 305 UTR5 Trans
TCONS_00166381 GRB2-related adaptor protein 2 novel protein coding ENST00000484380 646 309 UTR3 Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding ENST00000484380 617 315 noncoding Trans
TCONS_00174266 GRAM domain containing 1C novel protein coding ENST00000484380 610 304 UTR5 Trans
TCONS_00175015 copine IV novel protein coding ENST00000484380 629 307 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000484380 632 296 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000484380 616 305 UTR5 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000484380 634 299 UTR5 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000484380 624 299 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000484380 620 299 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000484380 620 299 UTR5 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000484380 606 305 UTR5 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding ENST00000484380 607 298 UTR3 Trans
TCONS_00204911 erythrocyte membrane protein band 4.1 like 4A novel noncoding ENST00000484380 604 293 noncoding Trans
TCONS_00210928 leucine rich repeat containing 1 novel protein coding ENST00000484380 644 309 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding ENST00000484380 630 304 UTR5 Trans
TCONS_00219453 WD repeat domain 27 novel protein coding ENST00000484380 602 287 UTR3 Trans
TCONS_00220258 aryl hydrocarbon receptor novel protein coding ENST00000484380 544 295 UTR3 Trans
TCONS_00222403 protein tyrosine phosphatase, non-receptor type 12 novel protein coding ENST00000484380 603 295 UTR5 Trans
TCONS_00226586 diacylglycerol kinase, beta 90kDa novel protein coding ENST00000484380 568 298 UTR3 Trans
TCONS_00226588 diacylglycerol kinase, beta 90kDa novel protein coding ENST00000484380 568 298 UTR3 Trans
TCONS_00235281 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 novel protein coding ENST00000484380 650 311 UTR5 Trans
TCONS_00235708 oxidation resistance 1 novel protein coding ENST00000484380 607 300 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000484380 549 301 UTR3 Trans
TCONS_00242952 ankyrin repeat domain 20 family, member A2 novel protein coding ENST00000484380 529 311 UTR3 Trans
TCONS_00242953 ankyrin repeat domain 20 family, member A2 novel protein coding ENST00000484380 529 311 UTR3 Trans
TCONS_00247297 family with sequence similarity 166, member B novel protein coding ENST00000484380 627 304 UTR5 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000484380 633 306 UTR5 Trans

Sequence

>TCONS_00252827 (1822 nt)
GACAAGTCTCAGGTCCTAGAGTCAGGGCAAAAGGTGAGGTGGTGAAGTGGCCCGGGCCTGGGAACTGCTGGCTCTAAGAACCTTCTATTCACATCCATGG
ATTGGGCCCACTACTCATAGCAGCTCCTGAGGCAGGTAAATGGGGCAAGGACTCACGCCAAATACCACACGCGTATGTCAAACACCCAAGGTCGGATTCT
GGGGCCCCTGCCCTCAGGAGGCTGTCAGACTGTTCCCCCTAAACACACTTCTGAAGGTTGTAGGGACCTTGCCCTGCTGTCTGCCGGCCAGAGCCTCTCC
CATCTGACCCAGGCCAGGCGTTCCCACCTCTCCTCCTTGGGAGGTTCCAGTGGGTTCTGGAGGGAGGGTGGGCTGTGTGCAGCTCCGTCTTTTGCTCGCC
CTCCTAGGTTGGTGTGGTTTTTTTCTTTTCTCAGGTGATATATCCCCTGAAGGAGGTCTACCCCGACTCAGGTGAGCTGGTCCTCCTTAGGTCATGTCCT
CTCCTTCTGTCATGGTTGTCCCTGCTCTACCTGACTGTGGCCTCATCTGTGCCCTTGGGGAGAGGCTCCAGCCAGGCCGCTGATTCAAGGAAGAGGGGCT
CCTCTCCTCTTCCTTTGACTGTTTTGGGGTCTGTACCCAGATCTCACCTCATTCTTTCTGTCCTTAAGGAGAGATGCCCACTGGGACAAGGAAAGTGATG
CCTTCCTTCACCCACCCCTTCCCTTATGAAGATCTGCAACCTGTGGTTTCAAAGCCTTCGCCCAGCATTCTGAGGCCCCCACCCCTGCATCATCCATGAT
GTGCCCTGTCTATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCACTCTGTCACCCAGACTGGAGTGCAGTGGTGTGATCTCGGCTCAC
TGCAACCTCCACCTCCCGGGTTCAAGCAATTCCCCTGCCTCAGCCTCTTCCGTAGCTGGGGCTACAGGTGCACGCCACCTTGCCTGCCTAATTTTTGTAT
ATTTAGTAGAGACAGCGTTTCACCATGTTGGCCAGGGTGGTCTCCATCTCCTGACCTTGTGATCCACCTGCCTCGGCCTCCCAAAGTGTTGGGATTACAG
GCGTGAGCCACTGTGCACAGCCTTGCCCTGTCTATTTTGACCAGCCAGGAGGCTCTGGCTTTTTGCAGAAGGCTTCTTTGTTGTGCAGGTTCTGCCGATG
ATGAGAGGATCTTGAGGTTCTTGGAATTGGCAGGCCTGGTAAGTGGGGAGAGGGACCCTCAGGACCCGAGCCCACCTGGGAGCACCAGCTACAGGTAGGC
AGGTGCTGGCCCTGCTATGCTTGGGCCCAGGACTGGAAGTCTGAACCTGGGGTGGAGAATGGGAGTATCAGTTGACAGTGTGTGCTGTTGGCCAGGTTTA
GGCACGAAGGGGGTAGTGCTCTCATTGGAGAATTTTAAAACAAGAATAGGATTGATGAAGGCGGTTTGCTTTTTACTGTCATCATGCTCCAGCAAGTCTA
AACAGTGTCATTGGTAGAATATTCCTCTCTGCCTGGGGCAGACTGTCCCACAGTCCCCCGCCTTGGTATGCCACTGGGGCATATATTTGTCTTAGAGGTG
TGTGTGTATGCTGGGGAGTGAGGGAGGTTCCCCATGATGGCAGGTAGCAGGGCTGGCCATTTCATGGACATCCTGCCCTCTGGGTCTGTTACAGTCCAAC
TTGGTGGCAAGGACAGAGGGCCTGGACCAGCAGGTGGACTGGAACTGGTATGATGTTCTGTCCCCGGGGGAGATGCAACGGCTCTCCTTTGCCCGACTCT
TCTACCTGCAGCCGAAGTACGCA

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.