| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000367590 | xenotropic and polytropic retrovirus receptor 1 | protein coding | ENST00000484855 | 523 | 256 | UTR3 | Trans | |
| ENST00000482603 | glyoxylate reductase/hydroxypyruvate reductase | processed transcript | ENST00000484855 | 590 | 286 | noncoding | Trans | |
| ENST00000553127 | spermatogenesis associated, serine-rich 2 | protein coding | ENST00000484855 | 607 | 302 | UTR3 | Trans | |
| ENST00000620139 | melanoregulin | protein coding | ENST00000484855 | 624 | 302 | UTR3 | Trans | |
| ENST00000623752 | TEC | TEC | ENST00000484855 | 656 | 283 | noncoding | Trans | |
| TCONS_00009095 | xenotropic and polytropic retrovirus receptor 1 | novel protein coding | ENST00000484855 | 523 | 256 | UTR3 | Trans | |
| TCONS_00009834 | SRY (sex determining region Y)-box 13 | novel protein coding | ENST00000484855 | 601 | 299 | UTR3 | Trans | |
| TCONS_00030130 | calcium/calmodulin-dependent protein kinase II gamma | novel protein coding | ENST00000484855 | 614 | 302 | UTR3 | Trans | |
| TCONS_00041296 | RIC3 acetylcholine receptor chaperone | novel protein coding | ENST00000484855 | 609 | 300 | UTR3 | Trans | |
| TCONS_00041298 | RIC3 acetylcholine receptor chaperone | novel protein coding | ENST00000484855 | 609 | 300 | UTR3 | Trans | |
| TCONS_00050741 | spermatogenesis associated, serine-rich 2 | novel protein coding | ENST00000484855 | 607 | 302 | UTR3 | Trans | |
| TCONS_00067572 | DCN1, defective in cullin neddylation 1, domain containing 2 | novel protein coding | ENST00000484855 | 614 | 296 | UTR3 | Trans | |
| TCONS_00076763 | protein phosphatase 1, regulatory subunit 13B | novel protein coding | ENST00000484855 | 601 | 302 | UTR3 | Trans | |
| TCONS_00090929 | nucleoporin 93kDa | novel protein coding | ENST00000484855 | 610 | 302 | UTR3 | Trans | |
| TCONS_00101169 | myosin phosphatase Rho interacting protein | novel protein coding | ENST00000484855 | 546 | 305 | UTR3 | Trans | |
| TCONS_00116668 | desmoglein 3 | novel protein coding | ENST00000484855 | 594 | 304 | UTR3 | Trans | |
| TCONS_00124891 | zinc finger protein 540 | novel protein coding | ENST00000484855 | 613 | 263 | UTR5 | Trans | |
| TCONS_00149280 | Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000416453} | novel protein coding | ENST00000484855 | 626 | 291 | UTR3 | Trans | |
| TCONS_00186316 | KIAA0232 | novel protein coding | ENST00000484855 | 614 | 298 | UTR3 | Trans | |
| TCONS_00192322 | tec protein tyrosine kinase | novel protein coding | ENST00000484855 | 637 | 298 | UTR5 | Trans | |
| TCONS_00203985 | family with sequence similarity 169, member A | novel protein coding | ENST00000484855 | 632 | 302 | UTR5 | Trans | |
| TCONS_00234826 | zinc finger, C2HC-type containing 1A | novel protein coding | ENST00000484855 | 655 | 300 | UTR3 | Trans | |
| TCONS_00248986 | transmembrane protein 246 | novel protein coding | ENST00000484855 | 509 | 306 | UTR3 | Trans | |
| TCONS_00253055 | uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) | novel protein coding | ENST00000484855 | 609 | 285 | UTR3 | Trans |
>TCONS_00253055 (2182 nt)
ATGCCAGATGCATCCCAGTCCTCGTAACAACCAAAATGCGTCCCTTGTACATTTCTTTTTCTTTTTTTTTTTGAGATGGAGTCTTGCTGTCACTCAGGCT
GGAGTGCAGTGCTGCGATCTTGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTTCTGAGTAGCTGGGACTACAGGCACG
CACCACCACGCCTGGCTAATTTTTGTATTTTTTTTTTTAGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCGTGATCCA
CTCACCTCGGTCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCACCACGCCCAGCATCCCTGTACCTTTCTAAATGGTGGTGAGTTGAGGCTGTCTGAAT
CCCAGCCCATCCAGCCCAACATCCAAGTCAGTCCTAGAGAGGTGGCCCCCCCCCAAAAAGGGGAGTGGAACCCAGCTGTCTGCCTTCTGGGTTGGAGCTT
GGAGATAGGAGAGAAGGTCTGATCTGTTGACTACTTTTCGCCCCGACCTGGTCTTCCTGGGGCCTGCTCGTATGTTCCCGGCAGCTTTCTGGTAAACTTA
CAGTACCGCCGTCTCTACCGAAGCATGAACTCCCAGTATCTGAAGCTGCTTAGCTCACAGGTGAGTGGGGAGAGCACAGCTGGATCACCAGCAGCCTTAG
GACCCCAGAGTAGCACAGCAAGCTGGGGGCCCTTGAGACTTCCTGTCAGGACAAGGGAAGCTGAAACTCCGAAAGGCGAAGCCCAGGGTCCTGTGATTGG
TGGGGTCAGAATTTGAACCTGGGTTTGTCCCCACCCATGCTGTCCTGCTATAGGAGGCCTAGGGGTCTGCATCAGCCACGGAGTCTTAAGGGTGAGAAGA
GCTTCATTCATGCCAAAAATGGGCCAGCAGAGGTCCAGGGTGGGAGGAGACCTTGCACAAGGTGATATAGGAAGCACTGGCAGGGCCAAGTTAGGACTAG
GTTCTGTCCAGCACAGTGGTTAATAGCATGGGCTCTGGAGTCACATGGCCTGGGTGCAAGTCCCTGTACTAGCCACATAATCTTGGGCAAATTTCTTAAA
TATGAGCCTCAGGTTCTCCATCTGTAAAATGGGGATAATAATGATATCTACCTTCACAGATAAAACATTTAGTAGAATACTGGACATGCAGTAAGTCGTT
AGAAAACATGAAAATTCCCTGGTTCGTGTTATCTAGCTTGGCCCCTTGAATTTCCTGAGGGGTAGGCCTTGAACTAGGGAAGGGCTGGGGACTGGGCTTG
TTCCACACCCCTCATTTTTACCCCATCCTGCTTTAGAAATACCAGATCCTATTATATAATGGAGATGTAGACATGGCCTGCAATTTCATGGGGGATGAGT
GGTTTGTGGATTCCCTCAACCAGAAGGTAAGGTAGAGATTCCTGGCCCTGGGATAGGGGCTGCTGTGGAGGATTGGGAGCGGGTATGCCTGGGAGTGGCC
AGCTGGCTGCCTGGCTCTGGCCCACAGAGGGCAAGTGTGGAGGAATTCCCAGCCCTAAGGTCTTGCTGGTAGCTGTGAGCAAGGATGCAGCTGCTGTAGG
CTGATGTCTTTCCTGGTGGGGCAGATGGAGGTGCAGCGCCGGCCCTGGTTAGTGAAGTACGGGGACAGCGGGGAGCAGATTGCCGGCTTCGTGAAGGAGT
TCTCCCACATCGCCTTTCTCACGATCAAGGGCGCCGGCCACATGGTTCCCACCGACAAGCCCCTCGCTGCCTTCACCATGTTCTCCCGCTTCCTGAACAA
GCAGCCATACTGATGACCACAGCAACCAGCTCCACGGCCTGATGCAGCCCCTCCCAGCCTCTCCCGCTAGGAGAGTCCTCTTCTAAGCAAAGTGCCCCTG
CAGGCCGGGTTCTGCCGCCAGGACTGCCCCCTTCCCAGAGCCCTGTACATCCCAGACTGGGCCCAGGGTCTCCCATAGACAGCCTGGGGGCAAGTTAGCA
CTTTATTCCCGCAGCAGTTCCTGAATGGGGTGGCCTGGCCCCTTCTCTGCTTAAAGAATGCCCTTTATGATGCACTGATTCCATCCCAGGAACCCAACAG
AGCTCAGGACAGCCCACAGGGAGGTGGTGGACGGACTGTAATTGATAGATTGATTATGGAATTAAATTGGGTACAGCTTCAAA
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.