Detailed information on ENST00000485119

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00168219 THO complex 5 novel protein coding ENST00000485119 503 271 UTR3 Trans
TCONS_00168220 THO complex 5 novel protein coding ENST00000485119 503 271 UTR3 Trans

Sequence

>TCONS_00168220 (964 nt)
AATACAGTTTCCAAATATGAGACTGTTTTTACTATAAAAATACAACTGGCCAGGTGCAGTGGCTCACGCCTAAAATCCCAGCTCTTTGGATGGCCAAGGC
AGGCGGATCACTTGAAGTCAGGAGTTTGAGACCAGCCTGGCCAACAGGGTGAAATCTTCTCTACTAAAAATACAAAAATTAGCCAGGTGTGGTGATGGAT
TCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCAGAAGTTTCAGTGAGCTGAGATCGTGCCACTGCAATCCAGC
CTGGGTGACAGAGCAAGACTTTGTCTCAAAAAAAACAAACAAACAAACAAACAAAAAACAAACTACAACTTCCTTACAAGACATAATGACTTCTTTTCTC
CATAAATGTCTCTAGTATTAGTTACATGATTGTATAATCTTCTACCTTATTTTAACTTGTCATAGCTATATATCTGTGAAGAAAATAGAAGAGCTAATGA
ATATGATTTCAAGAAAGCTTTGGACTTGTTGGAATATATTGATGAGGAAGAAGATATAAATATAAATGATCTAAAACTGGAAATCCTTTGCAAAGCTCTT
CAGAGAGATAAGTAAGTGCTCGTGGCATTGCTTCTTTGGAAAGTATAGAAACTGCTTTTCCTCTGCTCTCACCACATGACAGTCAATAACAGAAGACTTC
TGTGACCAGACGTGTTGGGATTTCCCACCTCCTACACTGGGCAACCAGTGAGTTCTGTTGGTGGGCACCAGCTGAATGTCCTTTAATTTAGTTCAGTCCT
GATACAATCTACAACCACAGGTTGAGGGCTCAGACTGCCCCTGACTTTGATGCCAATTTAAGCACCAGGGGGTTTTGCCTGTGTTCCTCACCGACCAGCT
ATAAATTGGGGTTCCCACAACCCCCTCCTTGGGTTTGATTAATTTGCTAGAGCAGCTCATAGAAC

Expression



Full and truncated open reading frames discovered in TCONS_00168220

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.