Detailed information on ENST00000485387

lncRNA-RNA interactions

Number of interactions: 26

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000382142 myotubularin related protein 12 protein coding ENST00000485387 606 287 UTR3 Trans
ENST00000399322 diacylglycerol kinase, beta 90kDa protein coding ENST00000485387 530 300 UTR3 Trans
ENST00000439138 transmembrane protein 98 protein coding ENST00000485387 544 289 UTR5 Trans
ENST00000560870 sense_intronic sense intronic ENST00000485387 534 268 noncoding Trans
ENST00000620139 melanoregulin protein coding ENST00000485387 610 302 UTR3 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000485387 604 289 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000485387 587 293 UTR3 Trans
TCONS_00119478 zinc finger and BTB domain containing 7C novel protein coding ENST00000485387 604 290 UTR5 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000485387 612 301 UTR3 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (... novel protein coding ENST00000485387 529 301 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (... novel protein coding ENST00000485387 529 301 UTR3 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (... novel protein coding ENST00000485387 529 301 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (... novel protein coding ENST00000485387 529 301 UTR3 Trans
TCONS_00141681 Rho guanine nucleotide exchange factor (... novel protein coding ENST00000485387 529 301 UTR3 Trans
TCONS_00148048 potassium voltage-gated channel, subfami... novel protein coding ENST00000485387 586 302 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000485387 600 295 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcript... novel protein coding ENST00000485387 644 294 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcript... novel protein coding ENST00000485387 644 294 UTR5 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding ENST00000485387 606 287 UTR3 Trans
TCONS_00204911 erythrocyte membrane protein band 4.1 li... novel noncoding ENST00000485387 604 303 noncoding Trans
TCONS_00204916 erythrocyte membrane protein band 4.1 li... novel protein coding ENST00000485387 604 303 UTR3 Trans
TCONS_00213738 enoyl-CoA delta isomerase 2 novel protein coding ENST00000485387 611 298 UTR3 Trans
TCONS_00226586 diacylglycerol kinase, beta 90kDa novel protein coding ENST00000485387 536 320 UTR3 Trans
TCONS_00226588 diacylglycerol kinase, beta 90kDa novel protein coding ENST00000485387 536 320 UTR3 Trans
TCONS_00240685 metastasis suppressor 1 novel protein coding ENST00000485387 501 239 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000485387 610 298 UTR5 Trans

Sequence

>ENST00000485387 (2898 nt)
CAAAGTGCTGAGATAACAGGCATGAGCCACTGCGCCTGGCAAGGTCATGCTTTTTGATGCTGGGTAGTTCTTTGACTCCTGACCTGGCCACTTGTTAGCT<br />ATGTGAACTTTGGACACATTTCTTAATCTCTGAATGTTGGTAAATTGGGGATGATGATACTGTCCCATACAGCTGTTGTAAGGGTTAAATGGTTCAAGTG<br />TTGCAAAGAGCTGAGCACGTGCCTGGCTCATAGTAAGTGTCCAACAAGTGATAGCTACTGGGGCTGCTGCTGTTATTATTATGCTTAACAGGTGGTTAAT<br />GAATAAAGAGATATATTATGCAAAATTATCAGAATCTGGCAAACAGCTGATAAGGCAATGAGGAAAGAGGTTTTTTGTTTTTTGTTTTTGAGACAGGGTC<br />TCTCTCTGTTGCCCAGGCTGGAATGCAATGGCGCGATCTCAGCTCGCTGCAACCTCCACCTCCCGGGTTCAAGCGATTCTTGTGCCTCAGCCTCCCGCGT<br />AGCTGGGATTACAGGCATGTGCCACCACACCCTGCTAATTTTTGTATTTTTAGTAGAGACATGGTTTCACCACGTTGGTCAGGCTGGTCTCGAACTCCTG<br />ACCTGAAGTGATGAGCCCACCTCAGCCTCCCAAAGTGCTGGGATTGCAGGGGTGAGCCACTATGTCCAGCCGAGGAAAGAGGTTTAAAATAACTTCTAGG<br />TTTCTGGTTTGGATGTCTGCATAGACGGTTCCATTTGCGTAGAGAGAATCTGCAGGAGAAGCAGACTTGGATGGGAATTTTTTTTTTTTTTTGAGTTGCA<br />GTGTCCACAGGGCCAGTGGGTGATTTCTTTTTTCCTTCTTTCTTTTTTTTTTTTTTTGGAGACAGTCTTGCTTTGTCACTCAGGCTGGAGTGGTGGCGCG<br />ATCACGGCTTGCTGCACACTGCAGCCTCAACCTCCCGGGCCCATGTAGTCCTCCCACCGCAGCCTCCCAAGTAACTGGGACTACAGGCATGTGCAACCAC<br />GCCTGGCTTATTTTTTAATTTTTTGTAGAGATGGGGTTTGGCTATGCTGCCCAGGCTGGTTTCTAACTCCTGGCATCAAGCGATCCTTTGGCCTCCCAAA<br />GTGCTGAGATTACAGGCGTGCGCCACCACACCCGGCCTCACCAGGCGCTGGCTGCATGGCCAGTTCTGGAGCCCGGGAGCAGGTTCTGTGTTGAGGGAGT<br />CACTCTGGGAGTCATTTGCTTGTGGGTGATCATCAGAGCCCTTTGTTTGGAGTCAAAATCCCAGGAAGAGTGCATAGACTGAGCAGAGAAGAGGGCCAGC<br />CACCTCCATAGAGGCAGGGAGAGCAGCCGAGCTGGAGCCGGAGGATTCCTGGACATGGAGAAGGCCTGCAGTTTTGTCAAGGAAGCAAGCAAAGGGTCTC<br />TTTCTACTCGATGAAGGTAGTCGGCACCGCCACAGGGTGGACAGGGCTCAGGTCCAAGGAGGAGGAGGAAGGCACACTGGAGCCGCTCTGGGGCCCAGAG<br />CGTGGGTGGGTGGTCCCCCAGGATGACCAGGCAGGTGTCAGATTTTGGGGTTCAAGGAGAGGATGGGAGGTGAAAAAGTGACACATCACGTGAGTTGCTG<br />TGAAGGAGAAGGAGCTGTGAAGCCGAGTAGACACATGAGCGTCGCCAGCTCTTTGATGGAAAGTGCCGGTTGAGGAGGAGGGGTTGAAGATGGGAGAGGG<br />AGGGAATGGGCTGGAGGTGAAGGCTCGGGGTCAGTGGTGGGACTTGGGGCGCTCCAGGGCAGGGGTGTGCCCACTTGGCATCACGTTTGTGGGTAGGTGG<br />CCTGGAAGATGAGCGTATCCAAGCATGGGTGGCCCCTGGTTCCTTTGAGGTAGGAGGTGAGATGCTGAGTGTGAGGGCCATGTGTATTGAGGGCCCAGGA<br />CAGCCTGGAAGCCCCAGGGCGCTGTGACCTCCCCAGTCAGCAGTGAGCTGTCTCCAGGCCGGGGCTCACTGGCTGGGACTGGGATTGAGAGGAAGGCGGA<br />GAAAACAGGCAGGAGAAACTGAAAGGGTCTCAGCTGGCGGGACAGGAAGTGTGGGCCCAGGGCTTGGCCCGGGAGGAGACAAGGGGACCAAGGGCTTGGC<br />AATGGGGATGAGATCAGAGAGCTGCAGCTTCCACCCCGGGTGCCTTCCTCGCCCTGCCCAGAGCGGCGGCCACACTGCTCTTTCTTGGAAGCCCTGTAAC<br />TTTGCGTGCCCTGCTCCATCCAGTTCGCTCCCAGGACCCCGGGCAGCGGCGGGTGCTGGACCGGGCTGCCCGGCAGCGTCGCATCAACCGGCAGCTGGAG<br />GCCCTGGAGAATGACAACTTCCAGGATGACCCCCACGCGGGACTCCCTCAGCTCGGCAAGAGACTGCCTCAGTTTGATGACGATGCGGACACTGGAAAGA<br />AAAAGAAGAAAACCCGAGGTGATCATTTTAAACTTCGCTTCCGAAAAAACTTTCAGGCCCTGTTGGAGGAGCAGAACTTGAGTGTGGCCGAGGGCCCTAA<br />CTACCTGACGGCCTGTGCGGGACCCCCATCGCGGCCCCAGCGCCCCTTCTGTGCTGTCTGTGGCTTCCCATCCCCCTACACCTGTGTCAGCTGCGGTGCC<br />CGGTACTGCACTGTGCGCTGTCTGGGGACCCACCAGGAGACCAGGTGTCTGAAGTGGACTGTGTGAGCCTGGGCATTCCCAGAGAGGAAGGGCCGCTGTG<br />CACTGCCCGGCCTTCAGAAAGACAGAATTTCATCACCCAATGCAGGGGGAGCTCTTCCTGGACCAAGGGAGGAGCCGCTCATTCACCCAACAAAACTGTG<br />TCTTATCTGCCAGGAAAGACCAGCCTCACTCCTGGGAACTGTCTGGCAGGTAGGCTGGGCCCCCCAGTGCTGTTAGAATAAAAAGCCTCGTGCCGGAA

Expression



Full and truncated open reading frames discovered in ENST00000485387

In silico ORF/peptide predictions
>peptide 1 (82 aa)
MRKEVFCFLFLRQGLSLLPRLECNGAISARCNLHLPGSSDSCASASRVAGITGMCHHTLLIFVFLVETWFHHVGQAGLELLT

>peptide 2 (70 aa)
MGMRSESCSFHPGCLPRPAQSGGHTALSWKPCNFACPAPSSSLPGPRAAAGAGPGCPAASHQPAAGGPGE

>peptide 3 (62 aa)
MQWRDLSSLQPPPPGFKRFLCLSLPRSWDYRHVPPHPANFCIFSRDMVSPRWSGWSRTPDLK

>peptide 4 (61 aa)
MLPRLVSNSWHQAILWPPKVLRLQACATTPGLTRRWLHGQFWSPGAGSVLRESLWESFACG

>peptide 5 (56 aa)
MKVVGTATGWTGLRSKEEEEGTLEPLWGPERGWVVPQDDQAGVRFWGSRRGWEVKK

>peptide 6 (56 aa)
MTTSRMTPTRDSLSSARDCLSLMTMRTLERKRRKPEVIILNFASEKTFRPCWRSRT


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT122456 (Evalue: 0)

Best hit to Swiss-Prot:
sp|O43257|ZNHI1_HUMAN (Evalue: 2.0E-74)