Detailed information on ENST00000486841

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000375587 centromere protein P protein coding ENST00000486841 4412 1505 UTR3 Trans

Sequence

>ENST00000486841 (2347 nt)
CTTTACGTATGTCGACTCTGACAGTGTGGTGTGTGTTGAGCTGTCCCTGGTCAGTATGGACAGACCCACATAGCTTGGAGCATGTGTTGAAGAGTGTAAA<br />TGTCAGAGCCAGCGTACCGGGTTTGAGTCCCTGCCTTGCCATTGACAAGCAGGGCATGACAGACAAGTGATGTCTGTGTCTGTTGCTTGTCTGTAAAGTG<br />GGACGCCGGCCGTGCTGCCCTGTTGGGCTGCTGTGAGGGTGGAGCAAGTTAACACATGCACAGCCTGTAGAAGGGTGGCCGTCTGCCGTTGTCTCTGGTG<br />GCTGTATGATGTTCCGGAGGGAATGTCGTTCTAAGCGATGCCTTGCTGAACACCCCCTGCGCTCTCCTTGCAGGTGTCGAGTGATACTCACTTGATACTC<br />TGAGTGTGGCCAACATGCGGGGCTCAGGTGGCTTACTGCTTTTCCTTCCAAAGGCCGACTGTGGTGACCTTGCTGAAGACAGATCATCCGTCTCAGGGTC<br />TGGAGTCGGGGTCCCACACTGCTTGCCGTGAGAGGTCAGGGGGCGGTGCTGGCCTCTGAGCAGCCCCGTGGCACTGAGGGCTGGCCCAGGTGCTCTCACA<br />GGGCGACCTCCTGACGCCCGTGCTCACCGTGGCCCTCGCTCCTAATCCCACCCTCAGGTTCTGAGGCAGGAAGCAGTTCCCACACTTGGCTACTGGGAAG<br />GAAGGTTGTGTGGGGGGGCAGAGGCTTCCTGTGTGACCTGGAGCTGATCTTTCCCGCCCCTGCAGGTGCAGCAGTACCGCGTCGCCATGACTGCCAAGGA<br />CTGCTCCATCATGATTGCACTGTCTCCCTGTCTGCAGGATGCCAGCTCTGATCAAAGGCCTGTCGTCCCTTCATCGAGGTCCAGGTTTGCCTTTTCCGTG<br />TCTGTGCTGGACCTTGACCTCAAGCCCTACGAGAGCATTCCCCATCAGTATAAACTGGACGGCAAGATCGTCAACTATTATTCAAAGACTGTACGTGCCA<br />AAGACAACGCCGTGATGTCGACTCGGTTCAAGGAAAGCGAAGATTGCACATTAGTTCTCCACAAGGTCTAACTCTTTCCCTGCAGTGTCTTTGAAACTTG<br />AACATAATGTGAAGGCTGAATGATAGAGATATTTTCTGTTGTGTTGGGTGACCTTTGGTTGTGAATGTTTTTGCTTTTAACCCCTTTTGAGGTGGGATTG<br />CCTCTTGGAGACATGGAATTGAAGAGCACTAGAAACAACTTCCTGGACAAGGAATGTAGGAAGTGAGTGCTGTGTCCCAGGAAGCTGCTCACACTCTTAA<br />AATGGAAGTGTCCGTTAAGCCCTGGGAAGACGTTCTGGATAGTTCTTCTTTCCCAACCAGGGCTCATGTCTGATTCTCTAATGCGAAAAGCCTTATTCTA<br />AGACCCAAGGTTTGGATCTGCTACCACCAGACTCCTAACATAGAAAACTTGAATTGTCACATACATTTTACAGTTTGGACTTTTAAGAAAACATGGATAC<br />TACTGGAACTTCCCCCAGCTGAGTTACATGGTCACTTTTTCAGTGCAAGCCACATATCAACACAGGTTTTTAGGTGGTTCCCTGCTGCACAGCGTGACCT<br />CGTGGTCGCGCAGATGCCGATTCTGAGCAGTGTAGACTCAGGGTCCCTGTGGAGGTGCTGAAGCCCACAGTTCCACACAGGGCAGCAGGGAGCGCAAGGC<br />TCAGGTCAGGATGGACACCACTCATGCGAGCATTGACCTTTTTTTTTTTGCTTTACAATTTAATCTTTCACATGAGGGGGAGATGAGCTGTTCTTTCCCA<br />CTAAAAATTGCTGCTGTAGAAGTTGGAGGTGGAGCTGTGACTGGCTGAGCTGCTGTGGCCGGGCTGGGCAGTGTGCCCCAACAGCTCAGTGCTTTCCTGA<br />CACTCCAGTGTCTGGGGTGGTTGAGGAGCGAGTTCTCTCTTCCTCCCAGACCAAGTTCCTCCCTCGGGTTTGCCTTGAGACGTGTTGCGTTTTTGGGCCC<br />CGTGGCCTCTCCCTGTTAGGCTGCCACAGGCCCTGCTTCTGGAAGGTGAACAGCTCCTGGCTGCTGCCGAGAGGGTTCTCGTTGGGGTCACCAAAGTGTG<br />CCCGGCTGCTATGAAAAACGTTGGGAATCTTGGTTTCAGTTTTTTATTCTATGCTAGGTTGTACAGACTTATTTATATCATCGTTTTGAGGGACTAATGG<br />AGGCTTATTGTAACATATAATATTAGTGAAACCATGGAATTATATGAAAATGATACATGAGAAATAAGGAAACTATTTTGCTGATTGTAAATTTTTGTGG<br />GAAATTTTGTGATAACTTGAGAATTATACTTGTTTGAATCAAGGCAA

Expression



Full and truncated open reading frames discovered in ENST00000486841

In silico ORF/peptide predictions
>peptide 1 (94 aa)
MTAKDCSIMIALSPCLQDASSDQRPVVPSSRSRFAFSVSVLDLDLKPYESIPHQYKLDGKIVNYYSKTVRAKDNAVMSTRFKESEDCTLVLHKV

>peptide 2 (58 aa)
MPALIKGLSSLHRGPGLPFPCLCWTLTSSPTRAFPISINWTARSSTIIQRLYVPKTTP

>peptide 3 (55 aa)
LRMSTLTVWCVLSCPWSVWTDPHSLEHVLKSVNVRASVPGLSPCLAIDKQGMTDK


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT133194 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q9H8X2|IPPK_HUMAN (Evalue: 2.0E-44)