Detailed information on ENST00000486927

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000617275 pleckstrin homology domain containing, f... protein coding ENST00000486927 610 249 UTR3 Trans
TCONS_00210637 polymerase (DNA directed), eta novel protein coding ENST00000486927 624 252 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding ENST00000486927 633 248 UTR5 Trans
TCONS_00233718 pleckstrin homology domain containing, f... novel protein coding ENST00000486927 610 249 UTR3 Trans

Sequence

>ENST00000486927 (553 nt)
ATTTCAAGTGGAAAATAGTATGTGAATCCTATAGGAAAAACAACTCTTTGTTTCCTGATTTAATAGTAATGAAGGAAGGAGATGAATGACGGAGTCTCGC<br />TCTGTCGCCCAGGCTGGGGTGCAGTGGCACGGTCTCGGCTCACTGCAAGCTCCGCCTCTTGGGTCCACGCCATTCTCCGGCCTCAGCCTCCTGAGTATCT<br />GGGACTACAGGCGCCTGCCACCGTGTCCGGCTTACTTTTTTTGTATTTTTAATAGAGACGGGGTTTCCCTGTGGTCTCGATCTCCTGACCTCGTGATCCG<br />CCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGAGAATTATGAAGATGATGACCTAGTAAATTCTGATGAGGTTATGAAGAAACCATGTCCAGTAC<br />AGATTGTTCTTGCTCATGAAGATGACCATAACTTTGAACTTGATGAAGAAGCTTTGGAGCAGATATTGCTACAGGAGCACATACGAGATCTTAACATAGT<br />AGTGGTATCTGTGGCAGGAGCTTTTCGTAAAGGGAAGTCATTTCTACTGGACT

Expression



Full and truncated open reading frames discovered in ENST00000486927

In silico ORF/peptide predictions
>peptide 1 (91 aa)
MTESRSVAQAGVQWHGLGSLQAPPLGSTPFSGLSLLSIWDYRRLPPCPAYFFCIFNRDGVSLWSRSPDLVIRPPWPPKVLGLQVRIMKMMT

>peptide 2 (58 aa)
MKKPCPVQIVLAHEDDHNFELDEEALEQILLQEHIRDLNIVVVSVAGAFRKGKSFLLD

>peptide 3 (56 aa)
MNDGVSLCRPGWGAVARSRLTASSASWVHAILRPQPPEYLGLQAPATVSGLLFLYF


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT070174 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8NHH9|ATLA2_HUMAN (Evalue: 2.0E-41)