Detailed information on ENST00000487304

lncRNA-RNA interactions

Number of interactions: 31

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000227155 CD82 molecule protein coding ENST00000487304 653 267 UTR3 Trans
ENST00000424496 sense_intronic sense intronic ENST00000487304 575 266 noncoding Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000487304 549 269 noncoding Trans
ENST00000524750 CD82 molecule protein coding ENST00000487304 550 231 UTR3 Trans
ENST00000607772 CNKSR family member 3 protein coding ENST00000487304 602 270 UTR3 Trans
TCONS_00001594 lincRNA novel protein coding ENST00000487304 662 263 UTR5 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000487304 642 265 UTR3 Trans
TCONS_00034642 CD82 molecule novel protein coding ENST00000487304 653 267 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000487304 653 267 UTR3 Trans
TCONS_00039782 GRAM domain containing 1B novel protein coding ENST00000487304 623 266 UTR5 Trans
TCONS_00041296 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000487304 635 266 UTR3 Trans
TCONS_00041298 RIC3 acetylcholine receptor chaperone novel protein coding ENST00000487304 635 266 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000487304 638 266 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000487304 638 266 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000487304 638 266 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000487304 638 266 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000487304 638 266 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000487304 638 266 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000487304 638 266 UTR5 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000487304 588 256 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000487304 597 262 UTR3 Trans
TCONS_00133831 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) novel protein coding ENST00000487304 617 262 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000487304 632 266 UTR5 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000487304 632 266 UTR5 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000487304 632 266 UTR5 Trans
TCONS_00165085 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000487304 618 266 UTR3 Trans
TCONS_00165089 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000487304 618 266 UTR3 Trans
TCONS_00165090 SPECC1L-ADORA2A readthrough (NMD candidate) novel protein coding ENST00000487304 618 266 UTR3 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000487304 610 266 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000487304 630 261 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000487304 610 266 UTR3 Trans

Sequence

>TCONS_00194686 (1961 nt)
CCCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAGGAAGCTAAGGCTGCGTTGGGGTGAGGCCCTCACTTCATCCGGCGACTAGCACCGCGTCC
GGCAGCGCCAGCCCTACACTCGCCCGCGCCATGGCCTCTGTCTCCGAGCTCGCCTGCATCTACTCGGCCCTCATTCTGCACGACGATGAGGTGACAGTCA
CGGAGGATAAGATCAATGCCCTCATTAAAGCAGCCGGTGTAAATGTTGAGCCTTTTTGGCCTGGCTTGTTTGCAAAGGTAAGGTGATGGTGGCAAAGTGA
TTGTGGTAAGGCCTGCTGATTTACGAGGGCAGTTGTACATGCTAAAGTACCCCCAGCGGTGCCATAACGCCCCACATGCCGCTGGATCTCCTAGGTGTTT
TTCGTTGCATGTATATCTCTAGGAGCTAATAAGATTTCAGCTTGTCAAGTCTTACGTTTCCTTATCAGACTCTGGTTTCCCTTTTGCTCTGAAACCATGG
TTAAAAAAAATGTGAATCAGGTCATTTATTCCCAAAAAGGGTCACTCGGGAGATAGGTACTACGCATGTTAAGTTGCAAGCAAATTCTTTTTCTTTTTCT
TTTTTTTTTCTTGAGACGGAGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTATCCTGCCT
CAGCCTCCCGAGCAGCTGGGACTACAGGCGTGCGCCACCATGCCTGGCTAATTTTTGTGTGTGTGTTTAGTAGTGACGGGGTTTCACCATGTTAGCCAGG
ATGGTCTCGATCTCCTGACCTCGTGATCCCCCCGCCTCTGCCTCCCAAAGTGCTGAGATTACAGGCTTGAGCCACCGCTCCCGGCCCGCAAGCAAATTCT
TTCAGTAAATTCTTGCATTAAACCTATGGTTTGATGGACATTTGGGTTTAGCGGACTTCATTGACACAGTAGGTACTGTGTGTTGGGATATAAAAGACTA
ATAAAGAGGTTCCTGGTCATGGAGCTTGCACTGGCTATTTTCCATTGTACAGGTTACTTAATCTCTGTCAAGTGAAGCTAATAGCATCTAACTCCAGGGT
TGTGACCTCTAAAGAGTTTTGAAAGATTGAAAACATTGTACCTATGTCATATTTAACAAGCCCCTTTTGAAGTCCTATATTTGTTTAGTAGACTGAAAAT
TTGAATTCACTGTTAAGAGGAGACATGGAACTGTGGAAAGAATATTCATTTGAGTGTTTCAGGAAGTTTGGATTTTTTTTTTACCAACATATTATTTGTA
AAAGGAGGGAAATCAGCTGCCTCAGGAGGTTCTTAACATATAGGAATGTAATTATCAGATTCAAAGCTGAACAGTAGTGCGTTGCCCTGTAACCTAAGTC
TTGGCTGTTAGCAAAGAAAAGCCAGTGTCTGGGGTATTGGTTCCAGGACCTTCCACTAATAACAAAATCCCAGGATGTTCCATCTCTTATATAAATGTAT
TTGCATATAACCTATGCACATCCTCCTGTATACTTTAGAAGTCTACATGTTTGGTACACATGCTTATTTTTCCACTGTTGAATCCATGGATGTGGAACTC
ACTGTATATAGTGTTAGGGGTTGATCACTGTAACCTGGAATGGGGGATACTTTTCGTTTTTGGCTGCGTGAGTGCTTAACAAGGACAGAACTGGGCGTTT
ACCTATGCATGCACATGTATTGCAGGCCCTGGCCAACGTCAACATTGGGAGCCTCATCTGCAATGTAGGGGCCGGTGGACCTGCTCCAGCAGCTGGTGCT
GCACCAGCAGGAGGTCCTGCCCCCTCCACTGCTGCTGCTCCAGCTGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGAATCCGAGGAGTCTGATGATGACA
TGGGCTTTGGTCTTTTTGACTAAACCTCTTTTATAACATGTTCAATAAAAAGCTGAACTTTA

Expression



Full and truncated open reading frames discovered in TCONS_00194686

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.