Detailed information on ENST00000487980

lncRNA-RNA interactions

Number of interactions: 90

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000257287 centrosomal protein 135kDa protein coding ENST00000487980 582 311 UTR3 Trans
ENST00000323699 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000487980 526 272 UTR3 Trans
ENST00000338977 zinc finger protein 721 protein coding ENST00000487980 605 288 UTR3 Trans
ENST00000345714 serum/glucocorticoid regulated kinase family, member 3 protein coding ENST00000487980 638 303 UTR3 Trans
ENST00000377411 G protein-coupled receptor 157 protein coding ENST00000487980 626 287 UTR3 Trans
ENST00000391877 delta(4)-desaturase, sphingolipid 1 protein coding ENST00000487980 526 272 UTR3 Trans
ENST00000422247 centrosomal protein 135kDa protein coding ENST00000487980 623 288 UTR3 Trans
ENST00000463899 N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase) processed transcript ENST00000487980 533 298 noncoding Trans
ENST00000478730 ORAI calcium release-activated calcium modulator 2 protein coding ENST00000487980 627 268 UTR3 Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000487980 562 267 CDS_UTR Trans
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript ENST00000487980 601 300 noncoding Trans
ENST00000621141 G protein-coupled receptor 1 protein coding ENST00000487980 557 293 UTR3 Trans
TCONS_00010841 epoxide hydrolase 1, microsomal (xenobiotic) novel protein coding ENST00000487980 648 298 UTR3 Trans
TCONS_00011236 solute carrier family 35, member F3 novel protein coding ENST00000487980 633 298 UTR3 Trans
TCONS_00012674 G protein-coupled receptor 157 novel protein coding ENST00000487980 626 287 UTR3 Trans
TCONS_00021902 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000487980 605 305 UTR3 Trans
TCONS_00021903 protein tyrosine phosphatase, non-receptor type 14 novel protein coding ENST00000487980 605 305 UTR3 Trans
TCONS_00030130 calcium/calmodulin-dependent protein kinase II gamma novel protein coding ENST00000487980 609 304 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000487980 643 294 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000487980 625 289 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000487980 625 289 UTR3 Trans
TCONS_00039117 nicotinamide N-methyltransferase novel protein coding ENST00000487980 607 299 UTR3 Trans
TCONS_00043422 vacuolar protein sorting 37 homolog C (S. cerevisiae) novel protein coding ENST00000487980 667 304 UTR5 Trans
TCONS_00050192 FYVE, RhoGEF and PH domain containing 4 novel protein coding ENST00000487980 624 305 UTR5 Trans
TCONS_00050209 FYVE, RhoGEF and PH domain containing 4 novel protein coding ENST00000487980 624 305 UTR5 Trans
TCONS_00051891 RNA binding motif, single stranded interacting protein 2 novel protein coding ENST00000487980 602 307 UTR3 Trans
TCONS_00053503 anoctamin 4 novel protein coding ENST00000487980 623 299 UTR3 Trans
TCONS_00053513 anoctamin 4 novel protein coding ENST00000487980 623 299 UTR5 Trans
TCONS_00056991 epidermal growth factor receptor pathway substrate 8 novel protein coding ENST00000487980 531 285 UTR3 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000487980 638 303 UTR5 Trans
TCONS_00065097 UBA domain containing 2 novel protein coding ENST00000487980 638 303 UTR3 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000487980 638 303 UTR5 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding ENST00000487980 665 298 UTR3 Trans
TCONS_00065864 long intergenic non-protein coding RNA 412 novel protein coding ENST00000487980 636 305 UTR3 Trans
TCONS_00085508 neuregulin 4 novel noncoding ENST00000487980 623 298 noncoding Trans
TCONS_00088780 synaptotagmin XVII novel protein coding ENST00000487980 613 286 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding ENST00000487980 507 270 UTR3 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000487980 610 290 UTR3 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000487980 507 270 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000487980 610 290 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000487980 507 270 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000487980 610 290 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000487980 507 270 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000487980 550 254 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000487980 645 306 UTR3 Trans
TCONS_00117136 CBP80/20-dependent translation initiation factor novel protein coding ENST00000487980 523 298 UTR3 Trans
TCONS_00133831 carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) novel protein coding ENST00000487980 631 306 UTR3 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding ENST00000487980 602 298 UTR3 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000487980 650 298 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding ENST00000487980 650 298 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000487980 642 297 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000487980 628 304 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding ENST00000487980 628 304 UTR5 Trans
TCONS_00148387 reticulon 4 novel protein coding ENST00000487980 662 288 UTR3 Trans
TCONS_00148389 reticulon 4 novel protein coding ENST00000487980 662 288 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding ENST00000487980 636 305 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding ENST00000487980 656 287 UTR3 Trans
TCONS_00150627 UDP-glucuronate decarboxylase 1 novel protein coding ENST00000487980 637 305 UTR5 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000487980 602 300 UTR3 Trans
TCONS_00175724 TSC22 domain family, member 2 novel protein coding ENST00000487980 635 305 UTR3 Trans
TCONS_00185516 transcribed_unprocessed_pseudogene novel protein coding ENST00000487980 644 289 UTR5 Trans
TCONS_00185519 transcribed_unprocessed_pseudogene novel protein coding ENST00000487980 644 289 UTR3 Trans
TCONS_00189321 transcribed_unprocessed_pseudogene novel protein coding ENST00000487980 610 297 UTR5 Trans
TCONS_00189329 transcribed_unprocessed_pseudogene novel protein coding ENST00000487980 610 297 UTR5 Trans
TCONS_00189333 transcribed_unprocessed_pseudogene novel protein coding ENST00000487980 610 297 UTR5 Trans
TCONS_00189336 transcribed_unprocessed_pseudogene novel protein coding ENST00000487980 610 297 UTR5 Trans
TCONS_00189341 transcribed_unprocessed_pseudogene novel protein coding ENST00000487980 610 297 UTR5 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000487980 605 288 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000487980 606 305 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000487980 606 305 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000487980 639 306 UTR3 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000487980 611 283 UTR3 Trans
TCONS_00199319 sorting nexin 24 novel noncoding ENST00000487980 655 292 noncoding Trans
TCONS_00204896 erythrocyte membrane protein band 4.1 like 4A novel protein coding ENST00000487980 651 306 UTR5 Trans
TCONS_00204911 erythrocyte membrane protein band 4.1 like 4A novel noncoding ENST00000487980 670 306 noncoding Trans
TCONS_00204916 erythrocyte membrane protein band 4.1 like 4A novel protein coding ENST00000487980 670 306 UTR3 Trans
TCONS_00206432 SH3 domain and tetratricopeptide repeats 2 novel protein coding ENST00000487980 602 303 UTR3 Trans
TCONS_00206433 SH3 domain and tetratricopeptide repeats 2 novel protein coding ENST00000487980 602 303 UTR3 Trans
TCONS_00213181 tubby like protein 4 novel protein coding ENST00000487980 600 302 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding ENST00000487980 600 302 UTR3 Trans
TCONS_00213738 enoyl-CoA delta isomerase 2 novel protein coding ENST00000487980 544 300 UTR3 Trans
TCONS_00213738 enoyl-CoA delta isomerase 2 novel protein coding ENST00000487980 602 298 UTR3 Trans
TCONS_00216910 high mobility group nucleosomal binding domain 3 novel noncoding ENST00000487980 614 299 noncoding Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000487980 607 267 UTR3 Trans
TCONS_00240832 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 novel protein coding ENST00000487980 641 288 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000487980 646 308 UTR5 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000487980 621 305 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000487980 646 308 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000487980 621 305 UTR5 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 novel protein coding ENST00000487980 609 294 UTR3 Trans

Sequence

>TCONS_00247058 (599 nt)
GTGCGGCAGTTGCAGGCGAGCAGGCGAGGAATCGCCGTGGCGTCTTGGTGTTCTCCACGCTGGTTCGCAGAATGTACCTGTGACATCTCTTTGACTCTCC
ACTGTTGCCCTTGAAGAACAGAGATGAGTTTTCTTCCTTTTTCATAAGGAAGCCACTTTTATAGCGAAAGAGAGCTGGAGAACTGGGATATCATGAGGAG
TTGTAGACAGTTAAACCTGAATTCTAGCTTTTGGAACAAAATAGTAATGTAATTGTAGCAGTTCTCACTTTTTTATTTTTTATTTTTTTGAGACGGAGTT
TCACTCCTGTTGCTTAGGCTGGAGTGCGATGGCGCAGTCTCGGCTCACTGCAACCTCCGCTTCCCGGGTTCAAGGGAGTCCCCTGCCTCTGCCCCCCAAA
TAGCTGGGATTACAGGCGTGCGCCACCATGCTCGGCTAATTTTTTGTATTTTTAATAGAGATGGGGTTTCACTATGTTGGTCAGGCTGGTCTCGAACTCC
TGACCTCAGGTGATCCGCCTGCCTTGGCCTCCCAAAGTGTTGGGATTATAGGCGTGAGCCAACGCGCCTGGCCAATTCTCACTTTTGGACCATCTACTAC

Expression



Full and truncated open reading frames discovered in TCONS_00247058

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.