Detailed information on ENST00000488013

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000621141 G protein-coupled receptor 1 protein coding ENST00000488013 508 229 UTR3 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding ENST00000488013 604 241 UTR3 Trans
TCONS_00065864 long intergenic non-protein coding RNA 4... novel protein coding ENST00000488013 604 242 UTR3 Trans
TCONS_00240685 metastasis suppressor 1 novel protein coding ENST00000488013 525 233 UTR3 Trans

Sequence

>ENST00000488013 (651 nt)
GGCGCAATCTCGGCTCACAGCAACCTCCGCCTCCCGGGTTCAAGCAATTCTCGTGCCTCAGCCCCGGGAGTAGCTGGGATTACAGGCGTGCACCACCACG<br />CCCGGCTAATATTGTATTTTTAGTAGAGGCGGGGTTTCTCCATGTTGGTCAGGCTGGTCACGAATTCCGGACCTCAGGTGATCCGCCTGCCTCGGCCTCC<br />CAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCGGCCCTGAGTGGACATTGTTAACCTCTTGTTTTAAATCAGCCGTGACGTTGCTTTCCATCTTC<br />TCTCCTGAGCTGTTTTCCTCAGCAGTGGGGGCCGGCTCTTGCCCCTGACGGGAATCCCAGTAAGGCATCCCCTTTTCTGACTACATTCTCCTTTTTTAGC<br />CCCAGGACCAAATTACCATCACAGGGTACGAAAAGAACACAGAAGCTGCCAGGGATGCTATACTGAGAATTGTGGGTGAACTTGAGCAGATGGTTTCTGA<br />GGACGTCCCGCTGGACCACCGCGTTCACGCCCGCATCATTGGTGCCCGCGGCAAAGCCATTCGCAAAATCATGGACGAATTCAAGGTGGACATTCGCTTC<br />CCACAGAGCGGAGCCCCAGACCCCAACTGCGTCACTGTGACGGGGCTCCCA

Expression



Full and truncated open reading frames discovered in ENST00000488013

In silico ORF/peptide predictions
>peptide 1 (80 aa)
RNLGSQQPPPPGFKQFSCLSPGSSWDYRRAPPRPANIVFLVEAGFLHVGQAGHEFRTSGDPPASASQSAGITGVSHRARP

>peptide 2 (54 aa)
MVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLP


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT129368 (Evalue: 3.0E-83)

Best hit to Swiss-Prot:
sp|Q5R439|VIGLN_PONAB (Evalue: 1.0E-46)