Detailed information on ENST00000488477

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00156217 antisense novel protein coding ENST00000488477 1050 546 UTR5 Trans
TCONS_00156217 antisense novel protein coding ENST00000488477 736 384 UTR5 Trans

Sequence

>ENST00000488477 (908 nt)
GCCGGACAGAGCAGAAGAACCCTCTTGGACTGGACGATTTGGGAATTCAAAACTTGGGACAAACTGTCAGCCTTGCTCCAGCGCCAGAGTGGTTCACATT<br />CAACCCTCCTCCCCCAGTGCAGAGAGCTCCCACGACTGATGACTCCTGAAGGAAAACCCTGGAGGTTCAGCTTTAGCTTGAGGTTTCAGGGCTTCCGAGG<br />CAATCGGGCAGCATCAGTCTTCAGCCACTAAGCTGAGAAGATCTGGGAAGGAGTCGGTCGGAGAGCCTTGGGCCAGAGTTCCAGGGGCTCTGGGAGTGGC<br />TGCCAGGTAGGAGGTGGGCTGATAGCACAAGCATTGGAGACCAGAATCAAGAGCTACCATACAGTTGGGAAAACTGGCTAGCCATATGCAGAAAACTGAA<br />ACTGGACCTCTTCCTTACATCTTATACAAAAATTAACTCAAGATGGATTAAAGACTTAAACATAAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTA<br />GGCAACACCATTAAGGAAGTAGGCATGGGCAAAGACTTCATGACTAAAACACCAAAAGCAATGGCAACAAAAACCAAAATTGACAAATGAGATCTAATTA<br />AACTAAAGAGCTTCTGCACAGCAAAAGAAACATCATCAGAGTGAGCAGGCAACCTACAGAATGGGAGAAAATGTTTGCAATCTATCCATGTGACAAAGGG<br />CTAATATCCAGAATCTACAAAGAACTTAAACAAATTTGCAAGAAAAAAAAAAAACCCATAAAAAGCGGGCAAAGCATATGAACAGACACTTCTCAAAAGA<br />AGACATTTATGTGACCAACAAACATATGAAAAAAAGCTCATCATCACTGGTCATTAGAGAAATGCAAATAAAAACCACAATGAGATACCATCTCATGCCA<br />GTTAGAAT

Expression



Full and truncated open reading frames discovered in ENST00000488477

In silico ORF/peptide predictions
>peptide 1 (76 aa)
AGQSRRTLLDWTIWEFKTWDKLSALLQRQSGSHSTLLPQCRELPRLMTPEGKPWRFSFSLRFQGFRGNRAASVFSH


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT077143 (Evalue: 0)

Best hit to Swiss-Prot:
sp|O00370|LORF2_HUMAN (Evalue: 2.0E-43)