Detailed information on ENST00000488602

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000513143 podoplanin protein coding ENST00000488602 563 298 UTR5 Trans

Sequence

>ENST00000513143 (2800 nt)
AAGTCAGCCTTCTCTGAGGAAGCGACATTTCAGCCGAGAGCTGAAGGATGTATAAGAGTGAGCTAGGTGAAAAGTAGGAGAATATTCTAGGAAGAATAGT
ATGTGCAAAGGTCCTGAGTCAGAAAGGAGGTTGTTGCCTTTGAGAATTTGAAAAAATAAAGGCTGGTAAAGGTGACCTAGTGAATGAGGATCAAAGATGG
AGCATTTAAACACATTCACTAACACTCTGTACCAGGTGCTGATTCTAAGTGCTGTACAAATGTAAGCTCGTTTGATCCTTACAGCAGCCCTTTGAGGTCG
ATACTACTATCACCCCCGTTTTACAGATTCAGAAAAAGGCACCTGCCCAGGTGGTACAGGCATTGTGGCTGCCCGGGCATTGTGTCTCCAGAGTGCTGCT
ATTACCTACTCCATTGAAATAGGACATGCTGTGGCCTGGGCAGTGGCTATAGCAGCAGAGATAACAAGAGAATTGTGCAGGTGGAAAATATGTTAAAGAG
GGGGCAGCAGAGAATTTCAGCCTTTAGAGGGGTTTTAGTGGTGAATTGGCTGTGAAGGTGGAGCCTAGTTTCTTGGGGGACGTAGTGTCACTTAATAGAC
ATAAAGACTTTCGGAGGGGCTGGTGTAGGCAAGATGGTGATATTTTGACATGTGTCAGGACGTGGCAAGCTCTTACTGTGTCTGAATCCCTAGAGTCTAA
TGCATAAAAGATGTTAAAGTATTTGTTAAAAGAATTATGAATTCCAAGGAGGAAATACAACTTAAGCCAAAGTCTGGAGGCAGGAAAGTGAGACAGGTTT
GAGCCCCAGCGATACTTGCCATGAAGCAGGAGTGTGGAGTGCCAGAGGTCATTCCCATCTGTCCCAGCCCTTGTCTCACTGTCGTGTCCTGGGTGCTCAC
CCACCTCCCCTGTTGGATGGAAGCTCCTAAAGGCACACACCTCCTTGGGCTTGTCCGCAGCCTTGGTGTCCACCACAGGTTTTGGCACATAGATGCTGAG
TGAGAGGAATGGCAAGCCTCGCAGCCAATGGAAAGAACACCTCTGCAGCTGCCACTTTGCTCCAAGCTGCATCGTCTCTTGCCTGAATTATTGCAGAAGC
CTAGCCGGTCTCCTGCCTTCCACATGCCCCTCCCCCCGTAATCTTGTTCTCAACAGCAACCAAAGTGATCGTGTAAAATCAGAAGTCATTCCTTGTTTTT
CCTCTGGGTGGCTCTCATTGTAGTCACTAAAAGGTGGCGGTCTTAGGGTGCCTGACAAGGGCTATATGACCTACCCCCACCCCCAGCCAAACTTGGTCTC
TTCCTGCTACCCACTCCCCCTACTCCAGCTGTTTTTGTTGTTGTTTTTGGTTTGTTTTTTTTTTTTTTGAGATGGAGTCTTGCTTTGTCACCCAGGCTGG
AGTACAGTGGTGCAGTCTCATCTCACTCCAACCTCTAGCCTCCCGAGTTCAAACGATGCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCCC
ACCACCACACCCAGCTAATTTTCGTTATTTTTAATACAGACGGGGTTTCACCATGTTGGCCACGCTGATCTCGAACTCCTGACCTCAGGTGACCTGCCTG
CCTCGGCCTCCCAAAGTGCTGAGATTACAGGTGTGAGCCACCGCACCCAGCCATTCCAGCTGTTTTGTGTTTTTCAAACACATTTGACACATTTCTGCTT
CAGGGCCTTTGCACTGGGTGTTCCCTCTACCTAGACAAATGCTCTTTCCCCGGATATCCACAGCTCTCTTCGAGTCATTTCAGTGAGACCTTCTCATTCC
CTCCTATTTGAAATTGCACCCTCCACCCCTGGAATTCCCCTTTTCTGTTTCCTCTTTTGTTTTTCTCCATGAAATGTTTGCGCTTCTAAAATACTGGGTC
CTTTGTCCTTCATCTCTCACTGAAGCGAAAGCTCCAGAGTAGCTCCCTTGGTGAGTAGTATTCAGGACATAATTGTTGGAAAATGGGGGTGGGGGCCAAG
AGCCTGGGGCTTTCAGCAGGACCTGTGTGGAGAATGCATTTGATGGAGAAGAGCCCAGCCGCTGTAATAACCTGGGAAGGGAACGATGAGGTCTTTGGCA
GGGCCATGGGCCAGGGACTGAGAATGGTTCCAGGGGGAGTGAATCTGAAATGGTGCTCCCTGCCTGCTACCCACAGACGAGTACCGGAAGCGAGAGTGTC
GAGACCACCTCAGAGTAAACCTGAAGTTTCTGACCAGGACGAGAAGCACCGTGGCTGAGTCTGTGAGCCAGCAGATTTTGCGCCAGAACCGGGGCCGCAA
GGCCTGTGACCGGCCTGTGGCCAAGACCAAGAAGAAGAAGGCTGAGGGCACCGTGTTCACCGAGGAAGACTTCCAGAAGTTCCAGCAGGAATACTTCGGC
AGCTAGGCTCCCTGGAGGGCACGGTGAAGAGGCCTTCAAGCCCTGCAGCCTCCGACTCCTGCTGGCTCCAGGAACCGGCCGTGCCGCGCGGCCAGCAGAT
GGCGATGCAGGACCAGCCTGGCTCGAGGAAGCCGCGGAGCTGAGCCGAGTGGAGGCTGGAATGGAGCTGGTGGGCCGGAAGTCCTGGGGAGGATTTACAC
ACAGACCGGAGCTGGCTTCCGCAGGCCTGGGCAGAGCATCTGCACCTGCCGGAAAGGAACGTATCTGTTTTGTTTGCTTTTGCCCAGGTGGGGCCTCTGG
GCTGTTTGCTGTGGAGCAAGGCTAATTCCTGAGCCCTTGGGGACGACAGCTCCAGGAGTAGGAAGAAGGGTGGGCTTCCAAGTTACAATAAATGTGAACC
C

Expression



Full and truncated open reading frames discovered in ENST00000513143

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.