Detailed information on ENST00000488663

lncRNA-RNA interactions

Number of interactions: 25

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000439138 transmembrane protein 98 protein coding ENST00000488663 563 294 UTR5 Trans
ENST00000513269 NEDD4 binding protein 2 protein coding ENST00000488663 514 289 UTR3 Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding ENST00000488663 557 282 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000488663 584 287 UTR3 Trans
TCONS_00023682 pre-mRNA processing factor 18 novel protein coding ENST00000488663 604 282 UTR3 Trans
TCONS_00023685 pre-mRNA processing factor 18 novel protein coding ENST00000488663 604 282 UTR3 Trans
TCONS_00023687 pre-mRNA processing factor 18 novel protein coding ENST00000488663 604 282 UTR3 Trans
TCONS_00023689 pre-mRNA processing factor 18 novel protein coding ENST00000488663 604 282 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000488663 602 283 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding ENST00000488663 616 286 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000488663 616 286 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000488663 616 286 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000488663 616 286 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000488663 627 287 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000488663 637 289 UTR5 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000488663 600 305 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000488663 600 305 UTR5 Trans
TCONS_00216910 high mobility group nucleosomal binding domain 3 novel noncoding ENST00000488663 611 300 noncoding Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000488663 603 286 UTR5 Trans
TCONS_00240685 metastasis suppressor 1 novel protein coding ENST00000488663 530 233 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000488663 612 285 UTR5 Trans
TCONS_00243136 glioblastoma down-regulated RNA novel protein coding ENST00000488663 512 287 UTR3 Trans
TCONS_00247616 unprocessed_pseudogene novel protein coding ENST00000488663 512 287 UTR3 Trans
TCONS_00247617 unprocessed_pseudogene novel protein coding ENST00000488663 512 287 UTR3 Trans
TCONS_00251977 G protein-coupled receptor 82 novel protein coding ENST00000488663 551 287 UTR3 Trans

Sequence

>TCONS_00251977 (1494 nt)
GGGGGAAGTTTAGGAGTTGAGGAAAGAAGATTAAAGAGCGCGAGGAGACAAATAAAAAGAAGTGTTAAGAATTGCCTTTGGGACTCTGAAGGCTGAAGAA
TTGATGAATTGCAAGTTTGTGCCCCATAGCTGCACAGACTGCCTGAAGTTACATTTAGAGACTGAAATCACTGCACCTTAAAAACAAAAGATTGAGCTGC
ACTGTATTCCTGGAAAGCACCTACCAAGGCTTCCTATTACCTATTTCACAGCATAAGCCTACAGGGTACGAAGAATGAACTCTGAGAATGTTTGGAGAAT
GTTTCATCATTACTAACAGGATATTCCTCATGACATTGCTGTCTGATTCAGAGGATACATGTGCAGGCTTGTTACCTGGGTATATTGTGTGATGCTGAGG
TTTGGGGTATGTATGATCCCATCACCCAAGTACTGAGCATGTACTGAACAGTTAGTTTGGTTTTTTGTTGTTGTTGTTTTGTTGTTGTTTTGAGATGGAG
TCTCATTTTGTCACCCAGGCTGGATTGCAGTGGTGCAATCTTGGCTCACTGCAACCTCCGTCCCCCCGGTTCAAGTGATTCTTGTGCCTTAGCCTCCCAA
GTAGCTGGGATTACAGATGCGCGCCATCATACCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGTCCAGGCTTGTCTCAAACTCC
TGGCCTCAAGTGATCCACCTGCCTTGGCCTCCCAAAGTACTGGGATTACAGATGTGAGACACCGCGCCCGGCCACTAAGAAGACTTTGATTTCTCGTCAC
ATCTTTTGATAATAAGGATCTGGAGCCAAAGGAGAAACAGAAACTACTTTTAAGAACTTTGGAGATCCAAGTTTAGTGGACTCTTAAGAGCCTGTATTAT
TTCTTGGATGACTTATCCAGCCCTTTGTAGAATCAGAACTCTCACAATTTTCTTTAAATCAAATAAAACCCAAGGGGTTAAGTGGATCTTTAAAATTATT
TCCAGGTCATTCTTTCAATAAACATTTATTGGTTTATTTGTTATTATTTCAACAAACTATGTGACAGGCAAACATGAACTCATTTCTTTCTTTCTTTTTT
TTTTTTTTTTTACCTTTCAACTCCTTTTATTTATTTACCTATTTATTTTCCTTAAGCAAGTAAATCTCCCTATGGATTGTTAAGGGCCCTGTGCATATTT
GCATGTAGCCAAAGATTCAGTCTCTTGCAGGAACTCTGGTTGTCAACTGGTGATCTTGCCTTTGTCTTTTCTCATAGTTCTGCCTGTGGCGCCTGTCACT
AGCAGTCAAATAAGGACAATTTTACCATTCTCTCCTGCTGCTCTAATTTTTTTTTAGTGCCGGTACATGAATTTGTTATTCTTTATAATTCCCTTTGAAG
TTGGAAATCCAAGGGGAATCTAAAACCGACCAGATGTTTCTGCTGCTGGAAAGGAAAGAGAGTAAGGATTAAGTTTAACAAAAACTTGGTCTCCA

Expression



Full and truncated open reading frames discovered in TCONS_00251977

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.