Detailed information on ENST00000489158

lncRNA-RNA interactions

Number of interactions: 11

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000375234 AhpC/TSA antioxidant enzyme domain containing 1 protein coding ENST00000489158 543 300 UTR3 Trans
ENST00000446045 AhpC/TSA antioxidant enzyme domain containing 1 protein coding ENST00000489158 543 300 UTR3 Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000489158 591 303 CDS Trans
ENST00000517408 antisense antisense ENST00000489158 501 298 noncoding Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000489158 569 289 UTR3 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000489158 620 300 UTR5 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000489158 553 306 UTR5 Trans
TCONS_00140000 long intergenic non-protein coding RNA 152 novel protein coding ENST00000489158 507 298 UTR3 Trans
TCONS_00200901 GM2 ganglioside activator novel protein coding ENST00000489158 559 300 UTR3 Trans
TCONS_00200902 GM2 ganglioside activator novel protein coding ENST00000489158 559 300 UTR3 Trans
TCONS_00251973 G protein-coupled receptor 34 novel protein coding ENST00000489158 546 290 UTR3 Trans

Sequence

>TCONS_00251973 (2112 nt)
GGTTTTGGGACAGCGGCAATCATGGCGCCACCTGTGAGATACTGCATCCCCGGCGAACGTCTGTGTAACTTGGAGGAGGGCAGCCCGGGCAGCGGCACCT
ACACCCGCCACGGCTACATCTTTTCGTCGCTTGCCGGCTGTCTGATGAAGAGCAGCGAGAATGGCGCGGTAAAGGAAGCGGCATGCCATCTCCCCTCTGT
TTTTCCCTTAGGCTGCCCTTGAGTTCCAGTCCTTAGGCATGGGCACTGCGGACGCGTCTTTAGTGCCTCAGTGGTACAATGTTGGTCTCTTAGTTTCTTC
TAGCCGTATCGCCGCTGTGGTGCACTTAGCCACCACACACTAGTTGTGTTGATCTCGCTTGGTTGTGCTGCTGACCCTCGGGGAGGGAAGTTGGGACAAA
AGCAGATGCGAACTCAGTATCCCATCCCAGCCCAGCTCAGCCCAGCAGTGAGTTGCATACTGTATGAATGTTGCTTACCTTTCCGACTTTATCTAGCGCC
ACTATCTCCACCTCACTGACGCAATCTAGTCATACTGTCTTTTCTGTGTTTAAAAGTTATAATCACAGTCTCTGCTTGCCCTTTAAAAATTTTTTATAAC
ATACTAGCTTCTTTCAGTGTCGGTAATGCGCCAAGCTTTCTCCTGCTACAGAGCCTTTGTAACATGCCATCTATCTGGAACGCTTCTATCTTCCTAGGCC
TATTTAATTCCTACCTCCTTTAGATAGCTTCTCTACTATCACCTCAGAGAAGTCCTTCTGGACCCACTAATTGAGGAAAGGAGTTTTGTGGGGTGTTTTG
TTTTTGTTTGTTTTGTTAAAGACTCACAAAAAACTCTGTTCCTTTTCTTCCAAGCACTATGTCAGCATATGATGAGACACTCAGGTATATGTTTCCTACT
AGACTTCTCCCCTGCTTAAATCTAAGTCCGTGAAAGCAGGCCCTACCACCATACCATCCGTATATAGCACAAGGCAGCTCCTCAATAAATGTTGAATGTG
TGAGTAATACCTACCTTTCTAGTTTCAGAGATAGATCCAGGATTAGCTCAGGATCATATAAGCAATATTTGAAGGAGCACAATAGAAAGAGGATTCAGAA
TTAGAACAGTTACGTTCTGGCTAACTTGACTTTGATTCTGCTTTGAGTAAGTAACTTAAGCTGTCTGATTCAAGGGGCTTTCTATTCAGTCATTGTTGGG
AATGTTCTTAACAGTCCTGAGTTTGTTCATTTCATAGATATCACTTGAGTATTTTCATGTGTCAGGCACAGCGCTGACTTGGTTTCTGCTATCAAAGGAC
ACAGACACAAATTGTAAACAAATAAATGCTCAAATGAGCATATGGTTACATATGTGGTGGTGCTTTGAAAGAATATTACAGGGCACCTTGAGAACATGTA
ACAGGCAAACCCATCCTAGTCAGCAGAAGTGACATTTAAGCTGAATCATCTAAAGAGTAGGTAAGAGTCAGGTGGGTGGAGAGAGTGCAGCTCTGGCAGA
AAGAATAGGTTGAAGAGAGATCTGAAAGTGGGAAGAATTTAGTAAGTTGGGGAAACTGAAAGAAGGCCAGGAGAGCTGAAGCATTGTGAGCAACGGAGAG
ATTGATAAAAGATGAGGCTCAAAATATCTGTCTTATACCAACAGCCAATACCATGCTCAAAGAGAAAACTCTGCAAGTATTCACTTAAAATAGAAGAAAA
CAAGCATAGCCGCTATTATGTAACATTTTTGTGGAAATTTCAGCCTGTGCAATAAAATAAGAAACAGAAGGAAGCAGTATAACTTTGGAGGAAAGAGTAA
ATTGTCGGCAGGGCGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAAGCCAAGGCAGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGC
CAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTACCCGAGCATGGTGACAGGCTTCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAG
AATCACTTGAACCCAGGAGGTGGAGGTTGCAGTGAACCAAGATGGCACCCTTGCACTCCATCCTAGGCAACAAGAGTGAAACTCCATTTCAAAAAAAAAC
AAAAAAAGTAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00251973

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.