Detailed information on ENST00000489158

lncRNA-RNA interactions

Number of interactions: 11

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000375234 AhpC/TSA antioxidant enzyme domain conta... protein coding ENST00000489158 543 300 UTR3 Trans
ENST00000446045 AhpC/TSA antioxidant enzyme domain conta... protein coding ENST00000489158 543 300 UTR3 Trans
ENST00000494969 colony stimulating factor 2 receptor, al... protein coding ENST00000489158 591 303 CDS Trans
ENST00000517408 antisense antisense ENST00000489158 501 298 noncoding Trans
TCONS_00107864 transient receptor potential cation chan... novel protein coding ENST00000489158 569 289 UTR3 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000489158 620 300 UTR5 Trans
TCONS_00135884 zinc finger protein 347 novel protein coding ENST00000489158 553 306 UTR5 Trans
TCONS_00140000 long intergenic non-protein coding RNA 1... novel protein coding ENST00000489158 507 298 UTR3 Trans
TCONS_00200901 GM2 ganglioside activator novel protein coding ENST00000489158 559 300 UTR3 Trans
TCONS_00200902 GM2 ganglioside activator novel protein coding ENST00000489158 559 300 UTR3 Trans
TCONS_00251973 G protein-coupled receptor 34 novel protein coding ENST00000489158 546 290 UTR3 Trans

Sequence

>ENST00000489158 (2113 nt)
GGTTTTGGGACAGCGGCAATCATGGCGCCACCTGTGAGATACTGCATCCCCGGCGAACGTCTGTGTAACTTGGAGGAGGGCAGCCCGGGCAGCGGCACCT<br />ACACCCGCCACGGCTACATCTTTTCGTCGCTTGCCGGCTGTCTGATGAAGAGCAGCGAGAATGGCGCGGTAAAGGAAGCGGCATGCCATCTCCCCTCTGT<br />TTTTCCCTTAGGCTGCCCTTGAGTTCCAGTCCTTAGGCATGGGCACTGCGGACGCGTCTTTAGTGCCTCAGTGGTACAATGTTGGTCTCTTAGTTTCTTC<br />TAGCCGTATCGCCGCTGTGGTGCACTTAGCCACCACACACTAGTTGTGTTGATCTCGCTTGGTTGTGCTGCTGACCCTCGGGGAGGGAAGTTGGGACAAA<br />AGCAGATGCGAACTCAGTATCCCATCCCAGCCCAGCTCAGCCCAGCAGTGAGTTGCATACTGTATGAATGTTGCTTACCTTTCCGACTTTATCTAGCGCC<br />ACTATCTCCACCTCACTGACGCAATCTAGTCATACTGTCTTTTCTGTGTTTAAAAGTTATAATCACAGTCTCTGCTTGCCCTTTAAAAATTTTTTATAAC<br />ATACTAGCTTCTTTCAGTGTCGGTAATGCGCCAAGCTTTCTCCTGCTACAGAGCCTTTGTAACATGCCATCTATCTGGAACGCTTCTATCTTCCTAGGCC<br />TATTTAATTCCTACCTCCTTTAGATAGCTTCTCTACTATCACCTCAGAGAAGTCCTTCTGGACCCACTAATTGAGGAAAGGAGTTTTGTGGGGTGTTTTG<br />TTTTTGTTTGTTTTGTTAAAGACTCACAAAAAACTCTGTTCCTTTTCTTCCAAGCACTATGTCAGCATATGATGAGACACTCAGGTATATGTTTCCTACT<br />AGACTTCTCCCCTGCTTAAATCTAAGTCCGTGAAAGCAGGCCCTACCACCATACCATCCGTATATAGCACAAGGCAGCTCCTCAATAAATGTTGAATGTG<br />TGAGTAATACCTACCTTTCTAGTTTCAGAGATAGATCCAGGATTAGCTCAGGATCATATAAGCAATATTTGAAGGAGCACAATAGAAAGAGGATTCAGAA<br />TTAGAACAGTTACGTTCTGGCTAACTTGACTTTGATTCTGCTTTGAGTAAGTAACTTAAGCTGTCTGATTCAAGGGGCTTTCTATTCAGTCATTGTTGGG<br />AATGTTCTTAACAGTCCTGAGTTTGTTCATTTCATAGATATCACTTGAGTATTTTCATGTGTCAGGCACAGCGCTGACTTGGTTTCTGCTATCAAAGGAC<br />ACAGACACAAATTGTAAACAAATAAATGCTCAAATGAGCATATGGTTACATATGTGGTGGTGCTTTGAAAGAATATTACAGGGCACCTTGAGAACATGTA<br />ACAGGCAAACCCATCCTAGTCAGCAGAAGTGACATTTAAGCTGAATCATCTAAAGAGTAGGTAAGAGTCAGGTGGGTGGAGAGAGTGCAGCTCTGGCAGA<br />AAGAATAGGTTGAAGAGAGATCTGAAAGTGGGAAGAATTTAGTAAGTTGGGGAAACTGAAAGAAGGCCAGGAGAGCTGAAGCATTGTGAGCAACGGAGAG<br />ATTGATAAAAGATGAGGCTCAAAATATCTGTCTTATACCAACAGCCAATACCATGCTCAAAGAGAAAACTCTGCAAGTATTCACTTAAAATAGAAGAAAA<br />CAAGCATAGCCGCTATTATGTAACATTTTTGTGGAAATTTCAGCCTGTGCAATAAAATAAGAAACAGAAGGAAGCAGTATAACTTTGGAGGAAAGAGTAA<br />ATTGTCGGCAGGGCGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAAGCCAAGGCAGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGC<br />CAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTACCCGAGCATGGTGACAGGCTTCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAG<br />AATCACTTGAACCCAGGAGGTGGAGGTTGCAGTGAACCAAGATGGCACCCTTGCACTCCATCCTAGGCAACAAGAGTGAAACTCCATTTCAAAAAAAAAC<br />AAAAAAAGTAAAA

Expression



Full and truncated open reading frames discovered in ENST00000489158

In silico ORF/peptide predictions
>peptide 1 (73 aa)
GFGTAAIMAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMKSSENGAVKEAACHLPSVFPLGCP


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT015868 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q9DAA6|EXOS1_MOUSE (Evalue: 5.0E-25)