Detailed information on ENST00000489672

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000620139 melanoregulin protein coding ENST00000489672 529 262 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting prote... novel protein coding ENST00000489672 502 262 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000489672 552 262 UTR3 Trans

Sequence

>ENST00000489672 (1472 nt)
CGGGATTTGGCGGGGCCTTTGTCTCTCGCTGCAGTCGCAGCTCCAGGTCTCGTCTTCACTGCTCTATGTCCTCTGCTCCTAGAGGTCCACCTTCTGTGGC<br />CCCGTTACCTGCAGGCCAGAAAAACTGGGAAAATCACAGGCTCTTCCACTTACTGGATGTTTGACAAAATATTCTTCTTGGGCCAAAAACATTGGCATTA<br />CTGGGACCACTGACATTTAGGGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGCAATGCCTGGACACTTCACAGCAGAATTTGTATAGGAATGTGATGT<br />TAGATAACTACAGAAACCTGGTCTTCCTGGGTATTGCTGTCTCTAAGCCAGACCTGATCACTTGTCTGGAGCAAGGAAAAGAGCCCTGCAATATGAAGAG<br />ACATGCGATGGTAGCCAAACCCCCAGGTTGGAGTGCAGTGGCGTGATCTTGGGTTACTGCAACCTCTGCCCCTCGGGATTCAAGTGATTCTACTGCCTCA<br />GCCTCCCGAGTAGCTGGGATTATAGGCGAGTGCCATCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGTGAGGGTTTCACCATGTTGGCCAGGCTGGTC<br />TCGAACGCCTGACCTCGTGTGATCCGCCCTCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACAGTGCCCGGCCAAGTATTTTTATATTTCA<br />GATCATATCTACTGAATGATTTGGTGACAGAAATTTGCATTGCTTTTACCTATTGGCTTTCAGTAACAATGGTATAATAATTATGGGTATGAAAATGACT<br />CTTCATATGACCACATATGTGAAAGTATATATATGTGCTGCATTCTATTTTACTAGTCTCCTTTTTTTTTTTACCTTTATACTTGTAGCAAATTGTTTTA<br />ATTCTGTAGCTTTGTAATATGTTTTAAAATCAGAAACTATAATGCTTCCAACATTGTTCCTTTTTTTGAAGATTGTTAGGTACTTTATTGTCTCTTGAGA<br />TTCCATATACTTTAGGGGTTGCTGTTTTTATGTCTTCAAAAATGCAATGAGAAATTGAGAAAACATTGCATTAAATCTTGTAGATTACATTGAGCAGTAT<br />AGACATCTTCCCAATATTTCAACTTTTGAACAAAAGCATGCTAAAGAATGTGGTTTAATTTACTATATATTTGTAAACTTGTTAGCTTTTAATATTGTTT<br />TATATTGTCATTCCATTTTTGTTATAGAAAGTAATCCATAAAATTTCAGTTCTAAAATACTTTTTAAGACTCTTTTGACTTATTTGGTGGTCTGTCAAGA<br />AGAAAGTTGTATAAGCTATTGATAAGGGTGTGTATCTTAATGTTGTTGAGTTTTGTATACCTATGTTAGGAATATTTGTTTTATACTGCCTTCAGGTCCT<br />CTGTTCTCTTACTAATGTTCTGTCTTGTTTTATTCTTACTATAGAAAATGGGATATTAAAATAGTCTATAAT

Expression



Full and truncated open reading frames discovered in ENST00000489672

In silico ORF/peptide predictions
>peptide 1 (70 aa)
RDLAGPLSLAAVAAPGLVFTALCPLLLEVHLLWPRYLQARKTGKITGSSTYWMFDKIFFLGQKHWHYWDH

>peptide 2 (53 aa)
GFGGAFVSRCSRSSRSRLHCSMSSAPRGPPSVAPLPAGQKNWENHRLFHLLDV


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT137698 (Evalue: 2.0E-65)

Best hit to Swiss-Prot:
sp|Q14593|ZN273_HUMAN (Evalue: 4.0E-45)