Detailed information on ENST00000489672

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000620139 melanoregulin protein coding ENST00000489672 529 262 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding ENST00000489672 502 262 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000489672 552 262 UTR3 Trans

Sequence

>TCONS_00116668 (1471 nt)
CGGGATTTGGCGGGGCCTTTGTCTCTCGCTGCAGTCGCAGCTCCAGGTCTCGTCTTCACTGCTCTATGTCCTCTGCTCCTAGAGGTCCACCTTCTGTGGC
CCCGTTACCTGCAGGCCAGAAAAACTGGGAAAATCACAGGCTCTTCCACTTACTGGATGTTTGACAAAATATTCTTCTTGGGCCAAAAACATTGGCATTA
CTGGGACCACTGACATTTAGGGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGCAATGCCTGGACACTTCACAGCAGAATTTGTATAGGAATGTGATGT
TAGATAACTACAGAAACCTGGTCTTCCTGGGTATTGCTGTCTCTAAGCCAGACCTGATCACTTGTCTGGAGCAAGGAAAAGAGCCCTGCAATATGAAGAG
ACATGCGATGGTAGCCAAACCCCCAGGTTGGAGTGCAGTGGCGTGATCTTGGGTTACTGCAACCTCTGCCCCTCGGGATTCAAGTGATTCTACTGCCTCA
GCCTCCCGAGTAGCTGGGATTATAGGCGAGTGCCATCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGTGAGGGTTTCACCATGTTGGCCAGGCTGGTC
TCGAACGCCTGACCTCGTGTGATCCGCCCTCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACAGTGCCCGGCCAAGTATTTTTATATTTCA
GATCATATCTACTGAATGATTTGGTGACAGAAATTTGCATTGCTTTTACCTATTGGCTTTCAGTAACAATGGTATAATAATTATGGGTATGAAAATGACT
CTTCATATGACCACATATGTGAAAGTATATATATGTGCTGCATTCTATTTTACTAGTCTCCTTTTTTTTTTTACCTTTATACTTGTAGCAAATTGTTTTA
ATTCTGTAGCTTTGTAATATGTTTTAAAATCAGAAACTATAATGCTTCCAACATTGTTCCTTTTTTTGAAGATTGTTAGGTACTTTATTGTCTCTTGAGA
TTCCATATACTTTAGGGGTTGCTGTTTTTATGTCTTCAAAAATGCAATGAGAAATTGAGAAAACATTGCATTAAATCTTGTAGATTACATTGAGCAGTAT
AGACATCTTCCCAATATTTCAACTTTTGAACAAAAGCATGCTAAAGAATGTGGTTTAATTTACTATATATTTGTAAACTTGTTAGCTTTTAATATTGTTT
TATATTGTCATTCCATTTTTGTTATAGAAAGTAATCCATAAAATTTCAGTTCTAAAATACTTTTTAAGACTCTTTTGACTTATTTGGTGGTCTGTCAAGA
AGAAAGTTGTATAAGCTATTGATAAGGGTGTGTATCTTAATGTTGTTGAGTTTTGTATACCTATGTTAGGAATATTTGTTTTATACTGCCTTCAGGTCCT
CTGTTCTCTTACTAATGTTCTGTCTTGTTTTATTCTTACTATAGAAAATGGGATATTAAAATAGTCTATAAT

Expression



Full and truncated open reading frames discovered in TCONS_00116668

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.