Detailed information on ENST00000489678

lncRNA-RNA interactions

Number of interactions: 66

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000263026 eukaryotic elongation factor-2 kinase protein coding ENST00000489678 643 288 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding ENST00000489678 618 305 UTR3 Trans
ENST00000413800 galactose-3-O-sulfotransferase 4 protein coding ENST00000489678 521 301 UTR3 Trans
ENST00000450928 antisense antisense ENST00000489678 607 302 noncoding Trans
ENST00000511184 E74-like factor 2 (ets domain transcription factor) nonsense mediated decay ENST00000489678 612 304 CDS_UTR Trans
ENST00000521027 pleckstrin and Sec7 domain containing 3 protein coding ENST00000489678 539 301 CDS_UTR Trans
ENST00000598368 RPARP antisense RNA 1 retained intron ENST00000489678 610 303 noncoding Trans
TCONS_00027001 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000489678 628 292 UTR3 Trans
TCONS_00027009 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding ENST00000489678 628 292 UTR3 Trans
TCONS_00034642 CD82 molecule novel protein coding ENST00000489678 622 299 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000489678 622 299 UTR3 Trans
TCONS_00061168 UHRF1 binding protein 1-like novel protein coding ENST00000489678 521 302 UTR3 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000489678 600 301 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000489678 600 301 UTR3 Trans
TCONS_00080928 SH3-domain GRB2-like 3 novel protein coding ENST00000489678 613 299 UTR5 Trans
TCONS_00089062 eukaryotic elongation factor-2 kinase novel protein coding ENST00000489678 643 288 UTR3 Trans
TCONS_00089065 eukaryotic elongation factor-2 kinase novel protein coding ENST00000489678 643 288 UTR3 Trans
TCONS_00089066 eukaryotic elongation factor-2 kinase novel protein coding ENST00000489678 643 288 UTR3 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding ENST00000489678 618 305 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding ENST00000489678 618 305 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding ENST00000489678 618 305 UTR3 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000489678 600 305 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000489678 600 305 UTR5 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000489678 606 292 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000489678 606 292 UTR3 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000489678 574 302 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding ENST00000489678 543 301 UTR5 Trans
TCONS_00114623 glutamine rich 2 novel protein coding ENST00000489678 609 301 UTR5 Trans
TCONS_00114628 phosphoribosyl pyrophosphate synthetase-associated protein 1 novel protein coding ENST00000489678 609 301 UTR5 Trans
TCONS_00119961 ring finger protein 152 novel protein coding ENST00000489678 647 308 UTR5 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000489678 624 305 UTR3 Trans
TCONS_00147100 ATPase family, AAA domain containing 2B novel protein coding ENST00000489678 624 305 UTR3 Trans
TCONS_00147106 ATPase family, AAA domain containing 2B novel protein coding ENST00000489678 624 305 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding ENST00000489678 625 301 UTR3 Trans
TCONS_00163084 T-cell lymphoma invasion and metastasis 1 novel protein coding ENST00000489678 609 299 UTR5 Trans
TCONS_00163348 runt-related transcription factor 1 novel protein coding ENST00000489678 621 297 UTR3 Trans
TCONS_00163350 runt-related transcription factor 1 novel protein coding ENST00000489678 621 297 UTR3 Trans
TCONS_00163352 runt-related transcription factor 1 novel protein coding ENST00000489678 621 297 UTR3 Trans
TCONS_00173724 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000489678 607 302 UTR5 Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000489678 607 302 UTR5 Trans
TCONS_00173730 cms1 ribosomal small subunit homolog (yeast) novel protein coding ENST00000489678 607 302 UTR5 Trans
TCONS_00185321 transferrin receptor novel protein coding ENST00000489678 601 301 UTR5 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000489678 618 300 UTR5 Trans
TCONS_00192322 tec protein tyrosine kinase novel protein coding ENST00000489678 604 297 UTR5 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000489678 612 304 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000489678 612 304 UTR3 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding ENST00000489678 626 301 UTR3 Trans
TCONS_00204896 erythrocyte membrane protein band 4.1 like 4A novel protein coding ENST00000489678 609 302 UTR5 Trans
TCONS_00222612 carnitine O-octanoyltransferase novel protein coding ENST00000489678 542 301 UTR3 Trans
TCONS_00222619 carnitine O-octanoyltransferase novel protein coding ENST00000489678 542 301 UTR3 Trans
TCONS_00222623 carnitine O-octanoyltransferase novel protein coding ENST00000489678 542 301 UTR3 Trans
TCONS_00226448 collagen, type XXVIII, alpha 1 novel protein coding ENST00000489678 517 297 UTR5 Trans
TCONS_00226450 collagen, type XXVIII, alpha 1 novel protein coding ENST00000489678 517 297 UTR5 Trans
TCONS_00226462 lincRNA novel noncoding ENST00000489678 517 297 noncoding Trans
TCONS_00226463 lincRNA novel noncoding ENST00000489678 517 297 noncoding Trans
TCONS_00226468 lincRNA novel noncoding ENST00000489678 517 297 noncoding Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000489678 612 301 UTR5 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000489678 608 299 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000489678 605 305 UTR3 Trans
TCONS_00243475 osteoclast stimulating factor 1 novel protein coding ENST00000489678 530 284 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000489678 637 296 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000489678 530 284 UTR3 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000489678 637 296 UTR5 Trans
TCONS_00246881 cyclin-dependent kinase inhibitor 2A novel protein coding ENST00000489678 612 301 UTR5 Trans
TCONS_00249092 transmembrane protein 245 novel protein coding ENST00000489678 602 285 UTR5 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000489678 670 300 UTR5 Trans

Sequence

>TCONS_00252827 (3007 nt)
CTGAAGAGCTTTGATCAGTTCACCTGCAACCTGCTGTATGTGAGCTGGAGGAAGGACCTCACTGAGCACCTTCACCGCCTCTACTTCCGGGGCCGTGCGT
ACTACACCCTCAACGTGCTGCGGGATGACATCGATAACCCGTAGGCGCCCCAACTCAGTCCTTTCTACACTCTGTGTGGTCCTTTCCTTCTGGCCTAGCC
CTGGAGACTGCTGGTGGCAGACACCAAGGAGATCATCTGCAGTCGTTTTCAAATGCTGCTGCCCAGAGTCATGGGGGAGGGTGCCCTGCAGAGGACTCCT
GGAGAAGCTGCAGGGCTGTGAATAGGCAGCTAAAAAGAAGAAGCCTGCCAGGTGCAGTGGCATGCACCTGTAGTCCCAACAACTCAGGAGGCTGAGGCAG
GAGGATCACTTGAGCCCAGGAGTAGTGCACCGTGAGCACACTTGGGAATAGCCACTGTACTCTAGCCTGGGCAACATAGCAGAAACCCCCATCTCTTAAA
AAAAAGAAAAATGTTAGGAGCAGCTTTCTTTTGTCCTTTTCATACTTTATATCTTAGTCTTCCAGTAAGAAGACTAAGGGGTTTCTTTAGAGGGTTCTAA
AGAAAATGTCCTTGCTAGAAAAACCAGCTCTTAGATTTTCATCAGTAAAAAAAATTACCACTATCCAGGACTCAGTCTAGGATTCACATCTCCATTCTAT
CACCACTCAGGTTATAACTCTTAAAGTCACCAAGCCCCAGGTTCCCCTTCTGTAAAATGAGGACAATAATAGTTCCTATCTCAAAGGGTGTAGTGAGGAT
GAAATATCATTCATGTAATGCACATGTACAGTGCTTGACACATAGCAAGTGTTTCAGTGTAAGTTAGCTATTGTTATTTTACAGATGAGGAAGCTGAAGC
CCAGAGATTGCAAGTGACTTGCCCAAGGTCACGTCACTCATTGGGAATAGGAATCAGTATGGCCCTAGTGGTGAGATGAGACATAGGGGGTCTCCTTCAC
ACCCATCCCCTCACTCACCACCTTCCTAGCAAGCACTTTGTTGGTTGGGGTACCTCTCAGCTCAAGCTTAGCTTTGGTGCAAAGATGCGTGGGAGGCTGC
TGCTGCTGCCTAACTTCTAGGCCTCTTTCTGATGGCTATGGCTTCCATCCTGCCTCTGCCCCCTGAGTAGCTGGGACTACAGGTGTGCCTCACAGCCTGG
AGCTTTCACAGCCAGATAACTAAAGGGGCCAGGCTAGGGCTTATATAAGAGAAATTTGGGAGGATTGAGATAAAGGGGATAGTCTTCTTGATCATCCAAA
ACAGCTCATCTACCTTCAAGTTTTTCTTTGGCTCTGCTCAGAGCTGGCTCAGGCCCCTGGGTACTGGACCTTTCAGTTCCCACTTTTTCAGGGGATTAAC
TAAGGCACCGTAAGATGCAACTCTCTAGAACCCTGTTTAAAGGCCCTGGGATTTAGTTGCCCCTAGGAAACCAGCCTTGTCTGGTTCCCTCTTCCCATAG
GGTCAGTGTTCACAGCACTGTGAGGCAAGGTCAAGAGCAGAGGTGATGTGAAAGTTTCTTGTTCTCTCTACCTTTGGGCCCATCTCCCTGGGTCCAGCTA
CTCTGTGTCATTGGCTCCAGGGACCAGCGCATCAGCCAGGACGTGGAGCGATTCTGCCGGCAGCTCAGCAGCATGGCCAGCAAGCTCATCATCTCCCCGT
TCACCCTCGTCTACTACACTTACCAGTGCTTCCAAAGCACAGGCTGGCTCGGGCCTGTGAGCATCTTCGGGTATTTCATCCTGGGGACCGTGGTGAACAA
AACTTTGATGGGCCCCATTGTGATGAAGCTGGTGCATCAGGAGAAGCTGGAGGGAGATTTTAGGTTCAAGCACATGCAGATTCGGGTGAATGCGGAGCCT
GCTGCTTTCTACAGGTGAGTCTGGAGAGATGGTTCCCCTTCTGCCTTGCCAGAGCTGAGAGTGGAGAAGGAAAGATGAATCCTCAACCCTCCCACCACCA
CCGAGCTCAGGGGCTGAGTGTTGTCACACTTGGCTGTGACCCTCTCCCTCTACCTCCCCCTGCCCTTGCCTGCCTCATCCTTAGGTCCAGGGGTTTGCTT
CTGAAGCTGGTGGTTCCTTACTGTGGCCAGCTTTAGTCTTAGTGGCCTAGCGTGGGGCCTGAAATTGTCAAATGAATGAATGCCTCATCCTCTTGCTGGT
GACTGTAAGACATCCGTCTGCCTCTGCTCTTCTGTCTGTTAAGAAGCTTTCTTGCCAGTGCCTGAGGTTCAAGCCTGATCCTTTGTCTCCGTAGCGTGGG
ATGGAATGGGAGCTTCTCAGAAAACCAGGAGACCTGCTCCCCACAATGCTGTCTAATGGAGCCAAGCGTCTGGTCTCCTGACGGCAGCAGCAGGAGCAGC
AGCAGCGGCATGAAATCCCATCCCTTCCCTCCAGGGCCAGAACCGGTCCCTGTGCTCTGCCTTATGTGAGGCCTCTGAAATCAGCGTTAGGATTGATAGT
GCAGGCAGAGGTTTGCGTTTAAGAAGTGGAAGCTACTCCTTGGCTCTGTACTTGGGGTGGATGTGATAGCCCTGGGACCTTTGCTCCTCAGTCTCTGCTG
CAGTTTGCAACCTCCACCACTTGAGGGCACCAAGAATACTGGGAATCTGCGCTGGGGTGGGGTTGTGAGGTGGGCAGGGCTGGGTGTGTAAAAAAGTTGC
TTTTGGAGGCCGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATTGCCTGAGGTCAAGAGTTCGAGACCAGCCATG
GCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCTGAGCATGGTGGCGGGCACCTGTAATCCCAGCTACTGGGGAGGCTGAGGCAGG
AGAATCACTTGAATCCGGGAGGCAGAGGTTGCAGTAAGGCAAGATCCTGCCATTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCGTCTCAAAAAAAAA
AAAAGAAA

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.