Detailed information on ENST00000489781

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript ENST00000489781 587 296 noncoding Trans
TCONS_00105791 arylsulfatase G novel protein coding ENST00000489781 620 294 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000489781 601 296 UTR5 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding ENST00000489781 635 295 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding ENST00000489781 635 295 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding ENST00000489781 635 295 UTR3 Trans

Sequence

>TCONS_00235231 (2145 nt)
GTGTCTTTCAGAAATCAGAGCCTCATTCCCTTAGTAGTGAAGCATTGATGAGGAGAGCAGTGTCTTTGGTAACAGATAGCACCTCTACCTTTCTCTCTCA
GACCACATATGCGTTGATTGAAGCTATTACTGAATATACTAAGGTATGTCTCCTCTTAACTCTTGATCTTCTAAACCATGGTTTAGCAAATAATGGCTCA
CAACCAAATTGTGTCTGATACCCATGTTGGTATTTGATTGAAACATAGCCAGGCCTATTTGTTTATGTGTTGTCAATAACGGTTTTTGAGGATTTGAGTA
GTTTCAACAGAGGCTGTAAGGCCCACAAAGCCCAAAATATTTACTGTCAGGCCCTTCAAAAAGTTTGCTGAGCCCTGATCTAAATCACTCGTTTTTAGAC
TTTTCCCAGGAACCTTTTTTTTTTTTTTTACAGAAAAATCTTAAATGTGGCAGCCTAGTATATAAAACAGGAGTGAAGCTGATATGGTTCAGTTAAGGGC
ACAGGGGCCTGTGGTCCATCAACAGAGGTTGCTCTGTGAGGATTATTTAAAAGCCACTGATCTAACCTAATAGAAAAGAGAGTATATGGGCCAGGCGTGG
TGGCTCACATCTGTAATCCCAGCAGTTTGGGAGGCCAAGGCGGGAGGATCACTTGGGGCCAGGAGTTCAAGACCAACCCAGTCAATGTAGCAAGCCCCAT
CTCTAGCAGAAAAAAAATTTTAAACTTAGCCAGGCATGGTGTGTTGTGTGCCTGTAGTCCCAGTTACTCCAGGGGCTGAGGTGGGAGGATCACTTGAGTC
TAGGAGTTTGAGATTACAGTGAGCTATGAACATGCCAGTGCACTTCCGTCTGGGTGACATAGCATCCTGTTTGTAAAAAATAATAAATTTTTTTTTTTGA
GATGGAGTCTTGCTTACGCAGGCTGGAGTGCAGTGGAGTGATGTCAGCTCGCTGCAATCTCCGCCTCCTGGGTTCAAGCGATTTTCCTTCCTCAGCCTCC
TGAGTAGCTGGGATTACAGGTGTGTGCCACCATGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTTGCCATGTTGGCCAAGCTGGTCTCGA
ACTCCTGACTTCAGGTGATCCACGTGTCTTAGCCTCCCAAAGTGCTAGGATTACAGGCATGAGCCACTGCACCCGGCCAATAAAAATTTTTTAGCGTATA
TGGATAATCAAAAGTATTGAAGTCTCATTTGTGCATTTGTTTTACATATATTTTCCAGCAGCTTTTTTCCCCTCAACCTTTAAAGTTTTCCCTTGCATTG
TTTTCTCTTTCTGTGTCTGAATTGCTGACAAGCTTTTAAAAACACAGAAGTTTACAGATGGAGATACTAATGTCCTGATACCTTTACTTCATAGGATAAT
AGTGCAATTTCATTGAGGCAGCAGGATGGAAGAGCCAGTTTGCTGTAATGGGACTTAATTTCCTTGAGGTGGAAATCTCTCTATTCCTTCTGATATGTCT
CACTTACTTTACTCAGACTTGTTCATTCTCTATTTGTAGGCTGTTTATACCTTAACTTCTCTTTACCGACAATATACAAGTTTACTTGGGAAAATGAATT
CAGAGGAGGAAGATGAAGTGTGGCAGGTGATCATAGGAGCCAGAGCTGAGATGACTTCAAAACACCAAGAGTACTTGAAGCTGGAAACCACTTGGATGAC
TGCAGTTGGTCTTTCAGAGATGGCAGCAGAAGCTGCATATCAAACTGGTAGGTTCAAGTTTTGTGTTGGGTTTTTTTTTTAATTTTTTAACTAGGAAGGT
ACCATTTGAGTTTTCATCTGGTTTTCTAAAATGAGGGCTTTATAGTAAATGGTCTAAGTGGCTCTCACTTTGAGAAATTTTCCCCATTTCCTACATATTA
ACCTACATTTTATTTGCACAATAGAAACAATGAGCATACCCTTGCAGACCAGACCAGTAGAAGCTAGGTTATGTCTTCAAAATGAAAAATGATAAAACTA
TTACCATTGGAAAATTGGATTGCTTCCAAATAGTTTTAGCTTCTTTTGGTAATACAATTTATTAACAATCATAGAATTACACCGTTGGCTGAGACTTGAG
ATGAGTAATCTATGTGAACCTTTTTGTACAGATGGAGAAAATGAGA

Expression



Full and truncated open reading frames discovered in TCONS_00235231

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.