Detailed information on ENST00000489781

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript ENST00000489781 587 296 noncoding Trans
TCONS_00105791 arylsulfatase G novel protein coding ENST00000489781 620 294 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000489781 601 296 UTR5 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding ENST00000489781 635 295 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding ENST00000489781 635 295 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding ENST00000489781 635 295 UTR3 Trans

Sequence

>ENST00000489781 (2146 nt)
GTGTCTTTCAGAAATCAGAGCCTCATTCCCTTAGTAGTGAAGCATTGATGAGGAGAGCAGTGTCTTTGGTAACAGATAGCACCTCTACCTTTCTCTCTCA<br />GACCACATATGCGTTGATTGAAGCTATTACTGAATATACTAAGGTATGTCTCCTCTTAACTCTTGATCTTCTAAACCATGGTTTAGCAAATAATGGCTCA<br />CAACCAAATTGTGTCTGATACCCATGTTGGTATTTGATTGAAACATAGCCAGGCCTATTTGTTTATGTGTTGTCAATAACGGTTTTTGAGGATTTGAGTA<br />GTTTCAACAGAGGCTGTAAGGCCCACAAAGCCCAAAATATTTACTGTCAGGCCCTTCAAAAAGTTTGCTGAGCCCTGATCTAAATCACTCGTTTTTAGAC<br />TTTTCCCAGGAACCTTTTTTTTTTTTTTTACAGAAAAATCTTAAATGTGGCAGCCTAGTATATAAAACAGGAGTGAAGCTGATATGGTTCAGTTAAGGGC<br />ACAGGGGCCTGTGGTCCATCAACAGAGGTTGCTCTGTGAGGATTATTTAAAAGCCACTGATCTAACCTAATAGAAAAGAGAGTATATGGGCCAGGCGTGG<br />TGGCTCACATCTGTAATCCCAGCAGTTTGGGAGGCCAAGGCGGGAGGATCACTTGGGGCCAGGAGTTCAAGACCAACCCAGTCAATGTAGCAAGCCCCAT<br />CTCTAGCAGAAAAAAAATTTTAAACTTAGCCAGGCATGGTGTGTTGTGTGCCTGTAGTCCCAGTTACTCCAGGGGCTGAGGTGGGAGGATCACTTGAGTC<br />TAGGAGTTTGAGATTACAGTGAGCTATGAACATGCCAGTGCACTTCCGTCTGGGTGACATAGCATCCTGTTTGTAAAAAATAATAAATTTTTTTTTTTGA<br />GATGGAGTCTTGCTTACGCAGGCTGGAGTGCAGTGGAGTGATGTCAGCTCGCTGCAATCTCCGCCTCCTGGGTTCAAGCGATTTTCCTTCCTCAGCCTCC<br />TGAGTAGCTGGGATTACAGGTGTGTGCCACCATGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTTGCCATGTTGGCCAAGCTGGTCTCGA<br />ACTCCTGACTTCAGGTGATCCACGTGTCTTAGCCTCCCAAAGTGCTAGGATTACAGGCATGAGCCACTGCACCCGGCCAATAAAAATTTTTTAGCGTATA<br />TGGATAATCAAAAGTATTGAAGTCTCATTTGTGCATTTGTTTTACATATATTTTCCAGCAGCTTTTTTCCCCTCAACCTTTAAAGTTTTCCCTTGCATTG<br />TTTTCTCTTTCTGTGTCTGAATTGCTGACAAGCTTTTAAAAACACAGAAGTTTACAGATGGAGATACTAATGTCCTGATACCTTTACTTCATAGGATAAT<br />AGTGCAATTTCATTGAGGCAGCAGGATGGAAGAGCCAGTTTGCTGTAATGGGACTTAATTTCCTTGAGGTGGAAATCTCTCTATTCCTTCTGATATGTCT<br />CACTTACTTTACTCAGACTTGTTCATTCTCTATTTGTAGGCTGTTTATACCTTAACTTCTCTTTACCGACAATATACAAGTTTACTTGGGAAAATGAATT<br />CAGAGGAGGAAGATGAAGTGTGGCAGGTGATCATAGGAGCCAGAGCTGAGATGACTTCAAAACACCAAGAGTACTTGAAGCTGGAAACCACTTGGATGAC<br />TGCAGTTGGTCTTTCAGAGATGGCAGCAGAAGCTGCATATCAAACTGGTAGGTTCAAGTTTTGTGTTGGGTTTTTTTTTTAATTTTTTAACTAGGAAGGT<br />ACCATTTGAGTTTTCATCTGGTTTTCTAAAATGAGGGCTTTATAGTAAATGGTCTAAGTGGCTCTCACTTTGAGAAATTTTCCCCATTTCCTACATATTA<br />ACCTACATTTTATTTGCACAATAGAAACAATGAGCATACCCTTGCAGACCAGACCAGTAGAAGCTAGGTTATGTCTTCAAAATGAAAAATGATAAAACTA<br />TTACCATTGGAAAATTGGATTGCTTCCAAATAGTTTTAGCTTCTTTTGGTAATACAATTTATTAACAATCATAGAATTACACCGTTGGCTGAGACTTGAG<br />ATGAGTAATCTATGTGAACCTTTTTGTACAGATGGAGAAAATGAGA

Expression



Full and truncated open reading frames discovered in ENST00000489781

In silico ORF/peptide predictions
>peptide 1 (71 aa)
VFQKSEPHSLSSEALMRRAVSLVTDSTSTFLSQTTYALIEAITEYTKVCLLLTLDLLNHGLANNGSQPNCV

>peptide 2 (62 aa)
MNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWMTAVGLSEMAAEAAYQTGRFKFCVGFFF


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT031498 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q9NR28|DBLOH_HUMAN (Evalue: 2.0E-36)