Detailed information on ENST00000491277

lncRNA-RNA interactions

Number of interactions: 86

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000323816 growth arrest-specific 7 protein coding ENST00000491277 540 291 UTR3 Trans
ENST00000367590 xenotropic and polytropic retrovirus receptor 1 protein coding ENST00000491277 527 303 UTR3 Trans
ENST00000373766 mitogen-activated protein kinase 13 protein coding ENST00000491277 613 297 UTR3 Trans
ENST00000382142 myotubularin related protein 12 protein coding ENST00000491277 598 288 UTR3 Trans
ENST00000389534 zinc finger protein 841 protein coding ENST00000491277 549 268 UTR3 Trans
ENST00000426391 zinc finger protein 841 protein coding ENST00000491277 549 268 UTR3 Trans
ENST00000437099 growth arrest-specific 7 protein coding ENST00000491277 540 291 UTR3 Trans
ENST00000439138 transmembrane protein 98 protein coding ENST00000491277 560 291 UTR5 Trans
ENST00000478730 ORAI calcium release-activated calcium modulator 2 protein coding ENST00000491277 605 291 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000491277 622 288 noncoding Trans
ENST00000513143 podoplanin protein coding ENST00000491277 537 297 UTR5 Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding ENST00000491277 603 282 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding ENST00000491277 631 296 UTR3 Trans
ENST00000560870 sense_intronic sense intronic ENST00000491277 531 269 noncoding Trans
ENST00000594295 zinc finger protein 841 protein coding ENST00000491277 549 268 UTR3 Trans
TCONS_00002817 lincRNA novel protein coding ENST00000491277 621 297 UTR3 Trans
TCONS_00009095 xenotropic and polytropic retrovirus receptor 1 novel protein coding ENST00000491277 527 303 UTR3 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding ENST00000491277 690 291 UTR3 Trans
TCONS_00010507 SET and MYND domain containing 2 novel protein coding ENST00000491277 585 291 UTR3 Trans
TCONS_00025760 zinc finger, MIZ-type containing 1 novel protein coding ENST00000491277 605 297 UTR5 Trans
TCONS_00025761 zinc finger, MIZ-type containing 1 novel protein coding ENST00000491277 605 297 UTR5 Trans
TCONS_00025775 zinc finger, MIZ-type containing 1 novel protein coding ENST00000491277 605 297 UTR5 Trans
TCONS_00028040 ankyrin repeat domain 16 novel protein coding ENST00000491277 649 297 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000491277 601 291 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000491277 622 295 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000491277 622 294 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000491277 657 299 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000491277 601 291 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000491277 611 295 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000491277 622 294 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000491277 622 295 UTR3 Trans
TCONS_00047135 ubiquitin specific peptidase 28 novel protein coding ENST00000491277 610 296 UTR5 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding ENST00000491277 631 296 UTR3 Trans
TCONS_00051246 sterol O-acyltransferase 2 novel protein coding ENST00000491277 628 291 UTR5 Trans
TCONS_00053851 transmembrane protein 263 novel protein coding ENST00000491277 624 296 UTR5 Trans
TCONS_00057601 transcribed_unprocessed_pseudogene novel protein coding ENST00000491277 660 291 UTR3 Trans
TCONS_00061864 transmembrane protein 116 novel protein coding ENST00000491277 620 291 UTR3 Trans
TCONS_00088780 synaptotagmin XVII novel protein coding ENST00000491277 615 286 UTR3 Trans
TCONS_00090929 nucleoporin 93kDa novel protein coding ENST00000491277 569 300 UTR3 Trans
TCONS_00090939 nucleoporin 93kDa novel protein coding ENST00000491277 569 300 UTR3 Trans
TCONS_00090941 nucleoporin 93kDa novel protein coding ENST00000491277 569 300 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000491277 617 285 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding ENST00000491277 634 289 UTR5 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding ENST00000491277 622 297 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000491277 634 289 UTR3 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000491277 622 297 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000491277 634 289 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000491277 622 297 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000491277 634 289 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000491277 622 297 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding ENST00000491277 519 298 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000491277 546 265 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000491277 614 299 UTR5 Trans
TCONS_00135644 zinc finger protein 841 novel protein coding ENST00000491277 549 268 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000491277 615 296 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000491277 620 296 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding ENST00000491277 605 299 UTR5 Trans
TCONS_00165715 LIM domain kinase 2 novel protein coding ENST00000491277 526 288 UTR3 Trans
TCONS_00165721 LIM domain kinase 2 novel protein coding ENST00000491277 526 288 UTR3 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding ENST00000491277 600 296 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding ENST00000491277 618 296 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding ENST00000491277 645 295 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000491277 607 297 UTR5 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000491277 638 291 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000491277 607 297 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding ENST00000491277 638 291 UTR5 Trans
TCONS_00199320 sorting nexin 24 novel noncoding ENST00000491277 604 287 noncoding Trans
TCONS_00200504 Rho GTPase activating protein 26 novel protein coding ENST00000491277 619 291 UTR3 Trans
TCONS_00202516 family with sequence similarity 173, member B novel protein coding ENST00000491277 645 290 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000491277 643 295 UTR5 Trans
TCONS_00211226 antisense novel protein coding ENST00000491277 607 297 UTR3 Trans
TCONS_00213182 tubby like protein 4 novel protein coding ENST00000491277 601 295 UTR3 Trans
TCONS_00213738 enoyl-CoA delta isomerase 2 novel protein coding ENST00000491277 601 297 UTR3 Trans
TCONS_00226753 cell division cycle associated 7-like novel protein coding ENST00000491277 604 291 UTR3 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding ENST00000491277 613 299 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding ENST00000491277 613 299 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding ENST00000491277 613 299 UTR3 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000491277 625 298 UTR5 Trans
TCONS_00240685 metastasis suppressor 1 novel protein coding ENST00000491277 525 233 UTR3 Trans
TCONS_00240685 metastasis suppressor 1 novel protein coding ENST00000491277 506 233 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000491277 625 297 UTR5 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding ENST00000491277 615 265 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000491277 625 297 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding ENST00000491277 615 265 UTR5 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 novel protein coding ENST00000491277 612 296 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000491277 637 293 UTR5 Trans

Sequence

>TCONS_00252827 (5551 nt)
CTTTCCAACTTTTTCTCGGCGGAGTGAGCGCAGCGGGCGCAGACTCGGGGGCAGGTTGCTGTGCTTCTCCGGGCTCAGCCGCCTGCTCTCCTGGCTCAGG
TCCTCGGGGAGCCCTAGACAGACATCAAGTGGCCACTGGCGCTCCTTCCCCTCCCAGCTGAGCCATCCTCCCCGGCCTCCTCGGGCGGGACAGCCCCGTG
CTTAGGTTTTTCTCCTTTTCTCCCCCGGTGCGCCTCTGCTCGGACTCTCGCGCCGGGATCGCGGCGGAAACCTCCCTCCCCTTTCGCCTCCTGCGGCTCC
TTCCCTTCGCCCCTCCTCCGCCAGTCACTGGAATCAATTCCGTGGGGAATCGGCTCCGCCGCCGCGAAGGACAGCCTTTCCGCGCGGGACTCCGGGGCGC
CACGGGGGCCATGTAAGCAGGTGGTGGTCTTTTGAATGGTTTGCGTGGAGTTGCTGCTGTCCATCACCAAGATTGAAGATTGAAGTCCTCACCGTCTTCC
AGCAGGCAGCGGTAGGTGGTGACCCTAGCCTCCAGCTTGGCCTTGATGTTCAGCAGGGCCTCGCACTCCTGGGCTTGGTGTTGCGCCTCTTCCTGGGTCT
GGGCCAGCCCTGACGCCAGGTGCAGCAGGATCTCGTTGAGCTGCTCCATCTGCAGGGTGTAGCGGACCTCCACCTCCCTCAGGCTGTTCTCCAAGCTGGC
CTTCAGATTTTTCATGGAGTCCAGGTCGATCTCCAAGGACTGGACCGTACGTCCCAGCTCCGTGAGTGTCATCTCAGCAGCTCCAACCTGGGCGGACTGG
GTGGTGACCACTGTGGTGCTCTCCTCAGTCCGCTCAGACCAGCACTTGTCCAGCTCCTCTCGGTTCTTCCGAGCCAGCTTGTCATATTGGGCCCAGATGT
CTGCCATGATCGTGGCGAGGTCCTGAGATTTGGGGGCATCAACCTCCATGGTCAACCCAGAGCTGGCAATCTGGGCTTGTAGGCCTTTTAGTTCATCTTT
GTGGTTCTTCATGAAGAGCAGCTCCTCCTTGAGAGCCTCGATCTCTGTCTCCAGCTGTGGCCAAGTGACATTGGTGTCATCAGTGACCTTGCAGAGCCCG
TAATGCTGCTCTCCACAGACTGGCGCCTGAGAGTCTGTCTCATACTTGACTCTAAAGTCATCAGCAGCAAGATGGGCATTGTCAGTCTGCAGAACGATGC
AGGCATTGTCCACAGTATTTGCTAAGATCTGAGCCCTCAGGTCCTCGATGATCTTGAAGTAATGGCCCCCAGTCTCTGACCTGGGGTCCCTTCTTCTCCA
GGTGCTCCCAGATTTTGCTCTCCAGCCTCCAGTTCTCGATCTCCAGGCTCCTCAGTCTGTCCAGGTAGGAGGCCAGGTGGTCTTTCAGGCTTTGCATGGT
CTCCTTCTCGTTCTGGATGCCTCCTATTCCTGCCAGGCCCCCAGCCATCCCTGCGGCCAGGCCCCGGGACCCCAAGCCATCCCAGAAGCTGGTGTAGCAG
GACACGGAGATCTGGAAACCAGAGCCCCTGGCACGTGCATAGGCTCTGGCCACGCTGTTGACCAGCTGGGCGGCTGGACAGAGCCCAGGGACCAGTAATT
GGTGGAGAAGTTGGAGCAAGTGGTGAAACTCATGCTGTCTGGGGAGGAGAACGAGAGGACAGGACCCAGGCTTTGCCAACGACCTCAGTATACTACTACT
TCAATACATATTTATTCTGACATTAAAATAAGACAGTGAAAAAGTAAAAACAAAACATACTTGATACAAGGTTTTATAACTTTTATCTCAATCAAATCAT
AGTAATTATCACTACAGAATTGAACAAGTGGTCAAACCTGCTCAGATTGCTGAGTTTTGTTTCATATTTTAAAGTCTTAGGAGGGAATTTATTTATTGCC
CTGTTGCCTAATATTGGATGGCTTTAATTCCATGGTTTTCAGAATTGCCTATTGCCATATGGTTTACATACAAAATACCACCTGAAACATAAGAACGGGT
CTTTCCTACGGCTTTCCCCCCACAAACTGTAAATGAAAACTTTTTATTACTGACTGTATCCTCTCATTTGGTTTAACTTACAAGTGTCATGTTGCCTGCT
GTTACACTTGTCTTTGGCGTCTGCTCAGAAATAATGGTGTCTAGACAGACCCATAAATATCCTGGGTTATAGTTCCTCATTTAAGGCTCTGAGACTTCAC
AGCAGGGGCAAGAAGACTTGCAGGGCAGATACGAGAAATCTTCAGGCCACTTAATTCAGAGTCCATTGGCAGAATAGGCAGAGAATGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTTAGGCTGGGTTGTAGAGATGGGTTTTGGAAATGATAGTTGGGTCTTGAAACTACTATTGGAGTGCAAATGCC
TCCTCCCTCATTTGGCGGAGAAACGTCAAAAATCCTCAGAACGGAAGAATCCATTCTCTTTATTTTGGGACACAGCCTGGTAAAACTTGTAAGAAATTAT
GACAGCTCTGTGGGAAGCAAGTGCAAGTGTGGGAGAAGCAAGTTGATGTGTGAAGCAGACATCAGTGTGTGAACCAGAGTTTATTTGAACAGTAGTAGTT
GCTGGTGGCAGAATGTTAAAAATGTGAGTATTAAGAGTATTAATGATGTGACTATTAAGACTTGGATTAGTGTTGAAGAAATGTGAACTTGAATAGATTT
GCTATGAAAGTCTTCGGATTTTTTTTCCTGTAATGGATTTTATTTCAATTTCAGTTCACTTTATATGAGTCTCCCTGGAATTCATTGCAAATTTCTTTTG
AAAGGTAAGGACCCGTTTGTTTATGAAGTTTTGATTTTTTAGGAGGTAAATATTTGAGGCAAAGTTGGTACTGAGGTTCAGAGTAAATGGGAATGAGGAT
GTTTTATATTAATATAGAAGTTAAGTAATTACAGAGAAAAGCTTTTAAAAATTAGTGCAGTAAAATAGGGTGCTTGTTTATATTGAATTGTTAGATATCT
TGGCTGAATTTATAAAAAGAAGGTTACTACTGAACTCTTAAAAGGTTATCGTACTCGTCGTAAATATTTTCGTAAACTGCTAATAGTTTTGACAACAAAA
GGAGTGCTTATCTTTGGAATATATTCTCCTTCACTGAATTATTTATTTTGGAAGAGTTGAGGCTAAGGGTGTAAAATATATTATAGAGCCAGGCATCATG
GTGCACGCCTGTGATTCCAGCACTTAGGGAGGTCAGTGTGGGTGGATTGCTTGAGCCCAGGAGTTCGAGACCAGCCTGGGCAACATGGTGAAACCCCGTC
TCTACAAAAAATACAAAAAGTAGCCAGGCATGGTGGTGCACCCCTGTAGTCCCAGCTTCTTTGGAGACTGAGGTGGGAGGATTGCTTGAGCCTTGGAGGC
AGAGGTTGCTATAAGCTGAGATCCTACCACTGATGCACACCAGCCTGGGTGACCGAAGGAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAGAAAAGAAAA
GAAAAAAGAAAGTATTATAGATTTTTAGAGCTTTTTGGTTAGGGGTTGATCACTTATGGGACCCCACACTGTGTTGCCCTCAAAGAGTTACTGTTACCAT
GTTCACTCCCTAATACTTTCTCCTTGCATTTTCCTTCCATTCCTTTTTTCTTCCCTCCTAGCCTGAATGTTGGCCTACTAGTGAAATCTGCTTATGGCCT
AACCTGATGGGTAATTAACAGACAATATGTTGTAGTTGTTGACCTAAGAAGGCCTGAGACTATTAGTCTGTTTTAACATACCTGCATCTATGAGGTATCT
GTAGTCAGCTCTGTTTTTCTTAAGTAGAGGTTTATCCATTACCAACAGTGAATGTTCAATGCAAGGAATAGCTTTTTAAAACATATGGCAAATTTGTGGT
TCTTTAGAATCCATTGTCATATAGTGGTTAATATATATATATATTTTTTTGAGACACACTCTTTCGCCCAGGCTAGAGTGCAGTGGTGCCACTTCGGCTC
ACTGCAACCTCCACCTCCCAGGTTCAAGCGATTCTCATGCTTCAGCCTTCCAAGTAGTTGAGACTACAGGCATGTGCCACCATGCCCGGCTAATTTTTAT
ATTCTTAGTAGAGATGGGGTTTTGCCATGTTGGCCAGGCTGGTCTCAAACTCCTGGCGTCAAGTGATCTGCCTGCCTCAGTCTCCCAAAGTGCTGGGACT
ACAGGCATGAGCCACCGTCCCCAGCACATGTTTGTTGATGTCCACAAGTTGTTAGAGGTTGTTTATAAGGAGGATGGTAGCCAAAACTGTTAATTTCTCC
CATGTCTCTGTAGAAGGAAAACCTGTGCAGCACGCTCTATTTTGCTAGTGTACTCAGTTGTCAAATAGATAGCCAACTTGTGTGTGACCAATCGTCTTTT
CTCCTTCACTCTGCTGCTTTGAAGACCTTGGTCTCTGAAACACATACTTTTGGTCAGGTATCTATGACCATAGAGATTAGGACCCATCTTCTTGACTTTT
TTTGGCAGAGAGACAGTGTCTCACTCTGTCATGCCCAGGCTAGAGTATAGTGGTGTGATCACAGTTCACTGCAGCCTCAAACTCCTGGGCTTAAGTGATC
CTCCCACCTCAGCTTCCTGTGTATCTGGGGCTACAGACATGCGCCACCACACACAGCTAAATTTTTTAATTTTAATTTTTATTTTTTGGTAGAGATGAAG
ATCTTGCTATATCCCCAGGCTGGTCTCAAACTCCTGGCTTCAAGTAATTTTCCCACCTTGGCCTCCCAAAGTCTTAGAGCTACAGGTGTGAGCCACCATA
CCCGGCCCCATCTTCTTGACTTACATAGGCTGTGGGTATCATCAAGCTAAAGCCCATTTTTTAAAACAACCATACCTCAATTCTTTTTTTTTTTTTTGAG
ATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCTCCACCTCCCAGATTTAAGTGATTCTTGTGCCTCAGTC
TCCTGAGTAGCTGGGATTATAGGCATATACCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGAGTTTCACCATATTGGCCAAACTGGTCTTG
AACTCCTGACTTCCAGTGATCCGCCCACCTCGGCCTCTCAAAGTGCTGGCATTAGAGGCGTGAGCCACTGCGCCCAGCCCCCATACCTCAGTTCTTAAAG
TATCTCAAGAATATTAAAACCAATTACCCTACCACTCAAGTATATCCACTGTGTTTTTATATATTATTTCTAAACTTTCTATTAATTATATAACTGTAAT
CATGTTATATATTTAGAATAATAGTCACATAGAGCAATATATTGTGAGAATACTTTTTCTGCTTTTCTTCCCATTTATCTTTTTAGTCACACTTTTCTCT
GTTGCCACATATTCTTAATATACTTAGAATGTTAATGGATGTATAGCTCATTGAGTAGTATGTTATAATTAACAATTTCCATTTGTTGACTATTTGGGTT
ATTTCCAGGTGTTTGTTTGGCTACTATAAATAAAATACCATTAACGTCTTTG

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.