| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000524264 | SAP30L antisense RNA 1 (head to head) | antisense | ENST00000491790 | 555 | 296 | noncoding | Trans | |
| ENST00000572705 | transient receptor potential cation chan... | protein coding | ENST00000491790 | 521 | 281 | UTR3 | Trans | |
| ENST00000572705 | transient receptor potential cation chan... | protein coding | ENST00000491790 | 641 | 298 | UTR3 | Trans | |
| TCONS_00107851 | transient receptor potential cation chan... | novel protein coding | ENST00000491790 | 521 | 281 | UTR3 | Trans | |
| TCONS_00107851 | transient receptor potential cation chan... | novel protein coding | ENST00000491790 | 641 | 298 | UTR3 | Trans | |
| TCONS_00140000 | long intergenic non-protein coding RNA 1... | novel protein coding | ENST00000491790 | 501 | 298 | UTR3 | Trans | |
| TCONS_00161482 | BTB and CNC homology 1, basic leucine zi... | novel protein coding | ENST00000491790 | 606 | 293 | UTR3 | Trans | |
| TCONS_00168219 | THO complex 5 | novel protein coding | ENST00000491790 | 519 | 290 | UTR3 | Trans | |
| TCONS_00168220 | THO complex 5 | novel protein coding | ENST00000491790 | 519 | 290 | UTR3 | Trans | |
| TCONS_00203984 | family with sequence similarity 169, mem... | novel protein coding | ENST00000491790 | 612 | 284 | UTR5 | Trans | |
| TCONS_00203985 | family with sequence similarity 169, mem... | novel protein coding | ENST00000491790 | 612 | 284 | UTR5 | Trans | |
| TCONS_00251307 | steroid sulfatase (microsomal), isozyme ... | novel protein coding | ENST00000491790 | 532 | 309 | UTR3 | Trans | |
| TCONS_00251309 | steroid sulfatase (microsomal), isozyme ... | novel protein coding | ENST00000491790 | 532 | 309 | UTR3 | Trans |
>ENST00000491790 (2116 nt)
TTAGTGATAGCAGTCATAAATCTCAGGGCACCGTGGAGTGGAGGCAGTTTATCTGGGAGCAGCTCTGTTGTTCCTCATCAGTTTTCCCTTGACCTAGAAA<br />GAGAATTGCTTTGATAAGGCTAAGCCATCACTGTACCTCCTCCCCACAGTCTTCAGGATGCATGGTCTTCAGGAGGGGAGGGCATGGGCAAAGGAAAAGG<br />CTGTACCATGTCCTGCTTCTCCTCACCTATTACTTCCCTTCTCAAAGCTGAATGCTGGGAACAAGAAGGGAAATGAGGGCTACAAGCTGTTTCGGGGCCT<br />GTCTGCTCTTGGGTCTGCTCAGTGGAAATGGGGGGAATAGACATAGCACTTCCCAGAGCCATTCATGTATATTGACATCCCATTTTATGGAGATAGAAAC<br />AGACTGACTTTAGCCTGGCGTGGTGGCGCACACCTGTAATTCCAGCTGCTGGGGAGGTTGAGGCATGAGATTCGCTTGAACCTGGGAGGCAGAGGCTTCA<br />GTGAGCTGAGATCGTACCATTTGCACTCCAGCCTGGGTGACAGAGCAAGACTCTGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAGAGAGAGAGAGACTG<br />ACTGATGTGAGGGGCTCTTTAATTTCACATCCTCCAGAACCAGCCATCCTGGTCATGCACCACTCCATGAAGCCCCACCCAGCCATCACTGCCACACTCC<br />TGGACTTCATGTGCCGCGTAAGTGTTAGAGCTCTCTTTTCTCCCCATGCCTGGATGAGCAGAATTCAGTGTATCTCCCCTAATCTCCCAGTGAACGGGTC<br />TTCTCGGTATGCCTTGACTGAGAGCAGAAATGGTCATGGGTCCTATCCCCCAAGTTAATAAATGCTTCCCTTCCATATTCCACTGTCTGCACTTGGATCT<br />TCCCATTTTCTGTGGGGTTTCTCAATCACAAGGATGGTGACTCAAGGTAGAATCTGGTTTCCTTGGGGAGCAGCCAGGTCCAGTAAGAATTTCTCATTTG<br />AGTGGCCTGGAGTGGTCAGGAAGTCCAGTTCTCTCTGCAGCCATACTCCCCAGTGTCCCCTGATCAAAACCAAAGCAGCTTTTCAGATCTAATTCAGCGG<br />AAGCCTCTGGATGGAGTCCTGTGCTCATTTTTCCCCTCCTTCTTCGCTTCCAGATCATTCCCAACTTCTATCCACCATTGGAGGGCCACGTGCGGCAGGG<br />TGTCTTTTCCTCCCTCAACCACATTGTGGAGAAACGGGTCTTGGCGTAAGGAATTTGGTGGGGGAAGGAGGTTGTTTTCCCATTTTTCATTAGGTCCAGG<br />TGTATCCAAATGTTGCCATAGCACTGCTGGCCCTTTTCTCTGACAGGTGTAAAAAGTATTGGCTCTACCTCAGACTGCTGGGCATATGTCTTCTTGGCTC<br />TTAGAGGAATTTCTCTCCTGCCATCGTATTACAAAGGTCTTCAAATGCCTTCATGTTCCCTGTTGACCCCCTTCAGGGATCTGAGTATGGTCCAGTTAGA<br />CTGATTGTGCTTAGACCTATCTCAACTCCATGTTGAGTTAGAAATGAGAAGCTCTGGCCAGACACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAG<br />GCCAAGGTGGGCAGATCACCTGAGGTTAGGAATTTGAGACCTGCCTGGCCAACATGGCAAAACCCGTGTCTACTAAAAATACAAAAATTAGCCAGGTGTG<br />ATGGTGCACACCTGTAATCCTAGCTACTTGAGAGGCTGAGGCACAAGAATCGCTTGAATCCGGGAGGTGGAGGTTGCAGTGAGCCGAGATTGTGCCACTG<br />CACTCCAGCCTAGGTGATGAGAGTGACACTCTGTCTCAAAAAAAAATAAAAATAAGAGAAGCTCTGATATTGACCTTCATCATGTTCCCCATTTAGACAC<br />CTAGCTCCCCTGTTTGACAACCCTAAGTTGGATAAGGAGCTGCGGGCAATGCTGAGAGAGAAGTTTCCTGAGTTCTGCAGCTCACCCTCCCCACCTGTGG<br />AAGTCAAAATTGAGGAGCCAGTTTCCATGGAGATGGACAACCATATGTCGGATAAGGATGAGAGTTGCTATGACAATGCAGAGGCAGCCTTCAGTGACGA<br />TGAAGAGGATCTCAAC
In silico ORF/peptide predictions
>peptide 1 (76 aa)
MLPFHIPLSALGSSHFLWGFSITRMVTQGRIWFPWGAARSSKNFSFEWPGVVRKSSSLCSHTPQCPLIKTKAAFQI
>peptide 2 (67 aa)
MHHSMKPHPAITATLLDFMCRVSVRALFSPHAWMSRIQCISPNLPVNGSSRYALTESRNGHGSYPPS
>peptide 3 (60 aa)
MESCAHFSPPSSLPDHSQLLSTIGGPRAAGCLFLPQPHCGETGLGVRNLVGEGGCFPIFH
>peptide 4 (60 aa)
MHGLQEGRAWAKEKAVPCPASPHLLLPFSKLNAGNKKGNEGYKLFRGLSALGSAQWKWGE
>peptide 5 (57 aa)
MRSSGQTQWLMPVIPALWEAKVGRSPEVRNLRPAWPTWQNPCLLKIQKLARCDGAHL
>peptide 6 (56 aa)
MLREKFPEFCSSPSPPVEVKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEEDLN
>peptide 7 (51 aa)
MLGTRREMRATSCFGACLLLGLLSGNGGNRHSTSQSHSCILTSHFMEIETD
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.