Detailed information on ENST00000491790

lncRNA-RNA interactions

Number of interactions: 13

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000524264 SAP30L antisense RNA 1 (head to head) antisense ENST00000491790 555 296 noncoding Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000491790 521 281 UTR3 Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding ENST00000491790 641 298 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000491790 521 281 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000491790 641 298 UTR3 Trans
TCONS_00140000 long intergenic non-protein coding RNA 152 novel protein coding ENST00000491790 501 298 UTR3 Trans
TCONS_00161482 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding ENST00000491790 606 293 UTR3 Trans
TCONS_00168219 THO complex 5 novel protein coding ENST00000491790 519 290 UTR3 Trans
TCONS_00168220 THO complex 5 novel protein coding ENST00000491790 519 290 UTR3 Trans
TCONS_00203984 family with sequence similarity 169, member A novel protein coding ENST00000491790 612 284 UTR5 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding ENST00000491790 612 284 UTR5 Trans
TCONS_00251307 steroid sulfatase (microsomal), isozyme S novel protein coding ENST00000491790 532 309 UTR3 Trans
TCONS_00251309 steroid sulfatase (microsomal), isozyme S novel protein coding ENST00000491790 532 309 UTR3 Trans

Sequence

>TCONS_00251309 (2115 nt)
TTAGTGATAGCAGTCATAAATCTCAGGGCACCGTGGAGTGGAGGCAGTTTATCTGGGAGCAGCTCTGTTGTTCCTCATCAGTTTTCCCTTGACCTAGAAA
GAGAATTGCTTTGATAAGGCTAAGCCATCACTGTACCTCCTCCCCACAGTCTTCAGGATGCATGGTCTTCAGGAGGGGAGGGCATGGGCAAAGGAAAAGG
CTGTACCATGTCCTGCTTCTCCTCACCTATTACTTCCCTTCTCAAAGCTGAATGCTGGGAACAAGAAGGGAAATGAGGGCTACAAGCTGTTTCGGGGCCT
GTCTGCTCTTGGGTCTGCTCAGTGGAAATGGGGGGAATAGACATAGCACTTCCCAGAGCCATTCATGTATATTGACATCCCATTTTATGGAGATAGAAAC
AGACTGACTTTAGCCTGGCGTGGTGGCGCACACCTGTAATTCCAGCTGCTGGGGAGGTTGAGGCATGAGATTCGCTTGAACCTGGGAGGCAGAGGCTTCA
GTGAGCTGAGATCGTACCATTTGCACTCCAGCCTGGGTGACAGAGCAAGACTCTGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAGAGAGAGAGAGACTG
ACTGATGTGAGGGGCTCTTTAATTTCACATCCTCCAGAACCAGCCATCCTGGTCATGCACCACTCCATGAAGCCCCACCCAGCCATCACTGCCACACTCC
TGGACTTCATGTGCCGCGTAAGTGTTAGAGCTCTCTTTTCTCCCCATGCCTGGATGAGCAGAATTCAGTGTATCTCCCCTAATCTCCCAGTGAACGGGTC
TTCTCGGTATGCCTTGACTGAGAGCAGAAATGGTCATGGGTCCTATCCCCCAAGTTAATAAATGCTTCCCTTCCATATTCCACTGTCTGCACTTGGATCT
TCCCATTTTCTGTGGGGTTTCTCAATCACAAGGATGGTGACTCAAGGTAGAATCTGGTTTCCTTGGGGAGCAGCCAGGTCCAGTAAGAATTTCTCATTTG
AGTGGCCTGGAGTGGTCAGGAAGTCCAGTTCTCTCTGCAGCCATACTCCCCAGTGTCCCCTGATCAAAACCAAAGCAGCTTTTCAGATCTAATTCAGCGG
AAGCCTCTGGATGGAGTCCTGTGCTCATTTTTCCCCTCCTTCTTCGCTTCCAGATCATTCCCAACTTCTATCCACCATTGGAGGGCCACGTGCGGCAGGG
TGTCTTTTCCTCCCTCAACCACATTGTGGAGAAACGGGTCTTGGCGTAAGGAATTTGGTGGGGGAAGGAGGTTGTTTTCCCATTTTTCATTAGGTCCAGG
TGTATCCAAATGTTGCCATAGCACTGCTGGCCCTTTTCTCTGACAGGTGTAAAAAGTATTGGCTCTACCTCAGACTGCTGGGCATATGTCTTCTTGGCTC
TTAGAGGAATTTCTCTCCTGCCATCGTATTACAAAGGTCTTCAAATGCCTTCATGTTCCCTGTTGACCCCCTTCAGGGATCTGAGTATGGTCCAGTTAGA
CTGATTGTGCTTAGACCTATCTCAACTCCATGTTGAGTTAGAAATGAGAAGCTCTGGCCAGACACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAG
GCCAAGGTGGGCAGATCACCTGAGGTTAGGAATTTGAGACCTGCCTGGCCAACATGGCAAAACCCGTGTCTACTAAAAATACAAAAATTAGCCAGGTGTG
ATGGTGCACACCTGTAATCCTAGCTACTTGAGAGGCTGAGGCACAAGAATCGCTTGAATCCGGGAGGTGGAGGTTGCAGTGAGCCGAGATTGTGCCACTG
CACTCCAGCCTAGGTGATGAGAGTGACACTCTGTCTCAAAAAAAAATAAAAATAAGAGAAGCTCTGATATTGACCTTCATCATGTTCCCCATTTAGACAC
CTAGCTCCCCTGTTTGACAACCCTAAGTTGGATAAGGAGCTGCGGGCAATGCTGAGAGAGAAGTTTCCTGAGTTCTGCAGCTCACCCTCCCCACCTGTGG
AAGTCAAAATTGAGGAGCCAGTTTCCATGGAGATGGACAACCATATGTCGGATAAGGATGAGAGTTGCTATGACAATGCAGAGGCAGCCTTCAGTGACGA
TGAAGAGGATCTCAAC

Expression



Full and truncated open reading frames discovered in TCONS_00251309

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.