Detailed information on ENST00000492196

lncRNA-RNA interactions

Number of interactions: 11

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000299157 IKBKB interacting protein protein coding ENST00000492196 501 309 UTR3 Trans
ENST00000309060 zinc fingers and homeoboxes 3 protein coding ENST00000492196 574 299 UTR3 Trans
ENST00000382142 myotubularin related protein 12 protein coding ENST00000492196 560 316 UTR3 Trans
ENST00000382142 myotubularin related protein 12 protein coding ENST00000492196 524 292 UTR3 Trans
ENST00000421422 zinc fingers and homeoboxes 3 protein coding ENST00000492196 574 299 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000492196 531 296 noncoding Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding ENST00000492196 537 283 UTR3 Trans
ENST00000569832 SSTR5 antisense RNA 1 lincRNA ENST00000492196 504 299 noncoding Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000492196 616 305 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000492196 577 305 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000492196 577 288 UTR3 Trans

Sequence

>TCONS_00116668 (2536 nt)
ATTTCTTTTATGCTAGCTTTGGGTTTAATCTGTTCTTTTTTTTTTTTTTTTTGAGACAGAGTCTCATTCTGTTGCCCAGGGAGTGCAGTGGTGCGATCTC
AGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTTTCCTGCCTCAGCTCTCCTGAATAGCTGGGATTACAGGCGTGTGTCACCACGCCCAGCTAAT
TTTTGTACTTTTGTTAGAAGCAGGATTTCACCATGTTGACCAGGCTCGTCTTGAACTCCTGGACTCAAGCGATCTGCCCACCCCAGCCTCTCAAAGTGCT
GGGATTATAGGTATGAGCCACCGCGCCCAGCCTCATTTGGTCTGTTCTTGTTCCTCTAGTTCCTTGAGGTGTGACATTAGGTTGTCAATTTGTGATCTTT
CAGACTTTTCTCTCTCTCTCTCTCTCTCTTTTTTAAATAGAGATGAGGTCTTGCTATGTTATCCAGGCTGGTCTTGAACTCCTGAGCTCAAGCAATCCTC
CTGCCTTGGCCTTTCAAAGTGCTGGGGTTATAGGCGTGAGTCACCATGCCTGGCTCAAGACTTCTTGATGTAGGCATTTAACACTATAAATTTTTCCTCT
TAGCACTGCTTTTGCTGTATCCCAGAGGTTTTGATAACTTGTGTCACTATTATTTATTTTGAAGAATTTTTAAATTTCCAGTGATTTCATTGTTAACCCA
AAAATCATTTAGAAGCAGATTGTTTAATTTCCATGTATTTGTATAGTTTTGAAGGTTCCTTTTCAAGTTGGTTTCTAGTTTTATTCGACTGTGGTCTGAG
AAGATACTTGATATGATTTCAATTTTTTTAAATTTGAGATTTGTTTTGTGGTCTATCATATGGTCTATCTTGGAGAATATTTCAGGCACTGATGAGAAGA
TTGTATATTCTGCAGTTCTGGAGTAGATGTTCTGTAAATATGTTAGTTGATTTGTTCTGGAGTATAGTATAGGTCCAGTGTTTGTTGACTTTCTGCCTTG
ATGATCTGTTTGCTGTTGTCAGTGGAGTGTGAAGTCTTCCACTATCATTGTGTTGCTGTCTTTCTCTTTTGTTAGGTCTGGTAGTAGTTGTTTTATGAAT
CTGGGAGCTCCAGTTTTAGGTGCATATATATTTAGGATTGTAATATCTTCTTGTTGGGTTGATCCTTTTATAATTATATAATAGCCTTCTTTGTCTTTTT
TTCAGTGTTGTTGCTTTAAATTCTATTTTATTTGATATAAGAAAAGCTACTGCTGCTTGCATTTGGCTTCCATTTGTATGGAATATCTTTTTCCACTCCT
TTACCTTTAGTCTATAAGAAGCCTCACATGTTAAGTGAGTCTCTTGAAGATGGCAGATATTTGGTTTGCGATTTATTTATTTATTTATTTATTTATTGAG
ACGGAATCTCGCTCTGTAGCTCAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACTGTAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCC
TCCCGAGTAGCTGGGACTACAGGCACACACCACCACACTTGGCTAATTTTTGTATTTTTAGTAGAGATTTTGCAACGTTAGCCAGACTGGTCTTGAATTC
CTGACCTCAGGTGATCCACCCACCTCAGCCTCCCCAAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCCAGCCTGTGATTTTTTTTTTTTTTTTGAGTG
GAGTATTTAGACCATTTACATTGAATGTTAATATTGAGATGTGAGGTACTGTTACAGTCATCATGTTGATTGTTACCTAGATACTTTTCTTCCTTCATTA
CATTATTGTTTTATAGGCCCTGTGAGTTTTATGCTTTCAAGAGGTTCTATTCTGGTGCATGCCAACCTTTTGTTTTAAGATTTAGAACTCCTTTTTGCAT
TTCTTGTAGGTCTGGTCTGGTAGTGACAAATTCCCTCAGCATGTGCTTGTCTGAAAAAGACTTTATTTCTCTTTCATTCATGAAACTTAGTTTTGTTGGA
TACAAAATTCTTGACTAATGTTTATTCTGCTTAAGGAGGCTAACAATAGGACCCCAATCCCTTCTGCAGTTGTAAGGTTTCTGGAGAGAAATTCTTGTGA
ATAAAACAATCCATCTTTTCTTTTTAGCTTCCACCAACACTTTCTTCCAAATATCCTGAAGATGACCCAGACTACTGTGTGTGGGTCCCACCTGAAGGTC
AAAGTGGAGATGGCAGAACCCATCTTAATGACAAGTATGGCTATTGATTGCTTCAGAATCCCAAAAGAAAACCTTGTGGACCATGTGACATGGAATATTT
GGGATAATGTATCAAATTGAATGGCCAGAGAAGTTTAGATGATTATTTGTAAGATCTGGTGACTGGCTTTTCGTTCTGTGTTCTTGGCTTCCTAAATTTA
TCTGCCCATATGATTCTCATGCATTTGATATTTATGTTTAAAAGTGTTTATATATGTATGTAAAAAGGGAACCATATGTTTTGAGAATTTGTAAAGTGAG
AGACATGATCCTATTAAAATAAGAAGGCAAAAATGTT

Expression



Full and truncated open reading frames discovered in TCONS_00116668

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.