Detailed information on ENST00000492689

lncRNA-RNA interactions

Number of interactions: 73

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding ENST00000492689 587 269 UTR3 Trans
ENST00000310045 dermatan sulfate epimerase-like protein coding ENST00000492689 604 277 UTR3 Trans
ENST00000338758 parvin, beta protein coding ENST00000492689 604 274 UTR3 Trans
ENST00000396349 MANSC domain containing 1 protein coding ENST00000492689 606 277 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript ENST00000492689 538 263 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding ENST00000492689 655 278 CDS Trans
ENST00000535902 MANSC domain containing 1 protein coding ENST00000492689 606 277 UTR3 Trans
ENST00000553936 gephyrin nonsense mediated decay ENST00000492689 635 273 CDS_UTR Trans
ENST00000560870 sense_intronic sense intronic ENST00000492689 529 260 noncoding Trans
ENST00000568559 transmembrane protein 170A nonsense mediated decay ENST00000492689 584 263 UTR3 Trans
ENST00000588483 tropomyosin 4 protein coding ENST00000492689 580 277 UTR5 Trans
ENST00000589403 zinc finger protein 532 processed transcript ENST00000492689 611 256 noncoding Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay ENST00000492689 546 278 UTR3 Trans
ENST00000620139 melanoregulin protein coding ENST00000492689 600 278 UTR3 Trans
TCONS_00001594 lincRNA novel protein coding ENST00000492689 613 273 UTR5 Trans
TCONS_00011236 solute carrier family 35, member F3 novel protein coding ENST00000492689 609 269 UTR3 Trans
TCONS_00027924 ADARB2 antisense RNA 1 novel protein coding ENST00000492689 619 268 UTR5 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000492689 604 273 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000492689 605 277 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000492689 619 274 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding ENST00000492689 606 276 UTR3 Trans
TCONS_00038233 protease, serine, 23 novel protein coding ENST00000492689 630 272 UTR3 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding ENST00000492689 637 277 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000492689 601 264 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding ENST00000492689 637 277 UTR5 Trans
TCONS_00065097 UBA domain containing 2 novel protein coding ENST00000492689 601 264 UTR3 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000492689 601 264 UTR5 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding ENST00000492689 637 277 UTR5 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding ENST00000492689 615 279 UTR3 Trans
TCONS_00075813 forkhead box N3 novel protein coding ENST00000492689 682 277 UTR5 Trans
TCONS_00075827 forkhead box N3 novel protein coding ENST00000492689 682 277 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000492689 513 249 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding ENST00000492689 514 265 UTR3 Trans
TCONS_00103259 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000492689 604 278 UTR5 Trans
TCONS_00103261 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000492689 604 278 UTR5 Trans
TCONS_00103262 Rap guanine nucleotide exchange factor (GEF)-like 1 novel protein coding ENST00000492689 604 278 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000492689 643 277 UTR3 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000492689 647 276 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000492689 643 277 UTR3 Trans
TCONS_00107867 transient receptor potential cation channel, subfamily V, member 1 novel protein coding ENST00000492689 647 276 UTR3 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding ENST00000492689 610 275 UTR3 Trans
TCONS_00109427 serine hydroxymethyltransferase 1 (soluble) novel protein coding ENST00000492689 606 276 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000492689 570 263 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding ENST00000492689 606 280 UTR3 Trans
TCONS_00119512 zinc finger and BTB domain containing 7C novel protein coding ENST00000492689 611 271 UTR3 Trans
TCONS_00123889 ribosomal protein SA pseudogene 58 novel protein coding ENST00000492689 640 272 UTR5 Trans
TCONS_00123899 ribosomal protein SA pseudogene 58 novel protein coding ENST00000492689 640 272 UTR5 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000492689 689 270 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding ENST00000492689 644 278 UTR5 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding ENST00000492689 612 278 UTR5 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding ENST00000492689 601 273 UTR3 Trans
TCONS_00148698 WD repeat containing planar cell polarity effector novel noncoding ENST00000492689 628 255 noncoding Trans
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding ENST00000492689 628 255 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding ENST00000492689 628 255 UTR3 Trans
TCONS_00150689 ectodysplasin A receptor novel protein coding ENST00000492689 605 279 UTR3 Trans
TCONS_00161618 interferon gamma receptor 2 (interferon gamma transducer 1) novel protein coding ENST00000492689 632 277 UTR3 Trans
TCONS_00163348 runt-related transcription factor 1 novel protein coding ENST00000492689 608 276 UTR3 Trans
TCONS_00163350 runt-related transcription factor 1 novel protein coding ENST00000492689 608 276 UTR3 Trans
TCONS_00163352 runt-related transcription factor 1 novel protein coding ENST00000492689 608 276 UTR3 Trans
TCONS_00168219 THO complex 5 novel protein coding ENST00000492689 601 240 UTR3 Trans
TCONS_00168220 THO complex 5 novel protein coding ENST00000492689 601 240 UTR3 Trans
TCONS_00185321 transferrin receptor novel protein coding ENST00000492689 618 269 UTR5 Trans
TCONS_00187460 spermatogenesis associated 18 novel protein coding ENST00000492689 616 278 UTR3 Trans
TCONS_00190276 transmembrane protein 144 novel protein coding ENST00000492689 619 268 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding ENST00000492689 517 260 UTR3 Trans
TCONS_00233179 BCL2/adenovirus E1B 19kDa interacting protein 3-like novel protein coding ENST00000492689 645 279 UTR3 Trans
TCONS_00234854 zinc finger and BTB domain containing 10 novel protein coding ENST00000492689 612 255 UTR3 Trans
TCONS_00235281 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 novel protein coding ENST00000492689 600 276 UTR5 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding ENST00000492689 622 279 UTR5 Trans
TCONS_00237415 pleckstrin and Sec7 domain containing 3 novel protein coding ENST00000492689 612 276 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding ENST00000492689 656 276 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding ENST00000492689 610 276 CDS_UTR Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding ENST00000492689 653 275 UTR5 Trans

Sequence

>TCONS_00252827 (2652 nt)
GCCTGCTCCAAGGGAAGGATCAGGAGAGAAGAAACGCAAATCCCAGAACCGTGCCAACATATAAAACCCCACATTAAGGGTTGTACAGTGCACTGGGATT
TCTCAAGTCACCCGCTTGGTCCTCTTCCAAGTATACTTTACTTCCTTTCATTCCTCTCTAAAACTTTTTTAAAAACTTTCACTCCTGCTCTAAAAGTTAT
CTTGGTTTCTTACTCTACCTTATGCCCCTTGGGCGAATTTTTTCCTCTGAGGAGGGAAGAATAGAGTTGCTGCTGCAGACACATCAGATTCCCTACTGGT
AACAGCTGGAGTGCGTCACCTCTGACAAAATTCTGGGGACGCTGGGAACACTGAATCAACATGGGCAATGAGAACAGCACCTCGGACAACCAGAGGACTT
TATCAGCTCAGACTCCAAGGTCCGCGCAGCCACCCGGGAACAGTCAGAATATAAAAAGGAAGCAGCAGGACACGCCCGGAAGCCCTGACCACAGAGACGC
GTCCAGGTAGGAGGCCAGCTCTGGAGGACTGATGCAGCCCAAGGACTGCCCCGCTCATTGCCTGCTCCAGCATTAGCTTTGCCCCATTTGCTTTGGAAAC
TGGACCCTTAGACACATGGTATCGTCCTCAGTGGTGAGATGTTCCAAGCAGTGGTTCACAGACCTCTCTGTGACTGGCTAGGCCTGCATGATTGAAAAAT
TCATCCTGATTGCCTGCCCAAAGATGAAATTAGTAATTATAGACTTCCATTCCAGCCACACTCCAGAGTATCTTCATTGTCAGAACTTAAAATGGAAAAC
ATCAAGGGTTCCCAGGGGTTTATCAGTGTCTAATCCGTGGCTAAGTGGAGTCTGTAACTCAGTGTGGTGGCCATTGCGGGCACTGGACCATGAAACAGAG
GACTGAGAACACAATTACCAAAGCCACCCAAGCCCTTTGTCCCAGGGAGGCTGGTGGATGAATCCCAGAAACCAACTGTGGCAGTGGGATGTGGCCAGTG
CGGGGGTGGCCCATCAGTCACTTCCTTTTTTTTGAGATGGAGTCTCATCCAGGCTGGAGTGCAGTGGCACGGTCTCGGCTCATTGCAACCTCTACCTCGT
GGGTTCAAGCGATTCTCCTGCTTCAGCTTTCCGAATAGCTGGGATTACAGGAGCCCGCCACCATGCCCAGCCATTTTTTGTATTTTTAGTAGAGACGGGA
TTTCACCATATTGGCCAGGCTGGTCTCTAACTCCTGACCTCAGGTGATCCACCCGCCTCAGCTTCCCAAAGTGCTGGATTATAGGTGTGAGCCACCATGC
CTGGCTGGTCACTGGCTCTTGTTATGAGCCACAGCCAGGCCCTAGGGCTCCCTGCCGGGGCTCTCTCCTGGGCCTCTCCCCATGTTGGCCCCACACTCAT
AGTTTTAGGGGATACAAGCAGTAGTCCAGCAGACTCGAGCACCTGGTGTCCAGCATGGACACAGGCCAGGCACGCTGGGGGCACTTAATAACTGCTCGTG
GGTTCAACTCGCAAACAGGCCATGGATTTGGTCAGAAAAACCCTGCAAAATTGGAGCCCAGCTCTCAGGAGTGTATCATGACAGGCCTTAAGGGAAGCAA
ATGAGCAGGAACTCTGTGGAACAAAAATGCAAAATGGAATGATAGGCCCCTGTCATAGACAATGCAACTTTGACTCACATGCTACTTCATAGCTTTGCAA
AACCTTGAGACTCAAAGTGACTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTTGGGTAAGTCAGAGCAACCCCTGGTGGCAGGAATTTTCATGCCTGGGG
CATGGAAGTGGGTGGCTTGGGCTATGTGGCTTTCCAGAGGAAGTACTTGGGGCATCTTGGCAGGAGCTTTGGATTTCTTTAGGGAAATGGCAATCAGATG
GGGCAGAGTGTTTTTTGCTGAGGGAATCAGAATGATCCCTCAAACAGCACCTTTGATCTCTATTCTCTGCTAAAGATGGTGCTTCCTCTACTTCCCCAGA
CCCCCGTGTCTGTTCCATTTCCATGAATTTTTCATCAGGGTCACAGGACAAAGGTTTTAGTCTTTGGTTCTAATGAGACCTCTGACTTGGCTCTGGATGA
CTATGAAACTAGTGAATGCATTTGTCTTTTCTGGAATCCCACACAAGGGAAGCCACTGTGGCTGCTGAGGCCCAGGGTCCAGCTCTTCTCTTTCCCTCTT
GGTGAGGTCCTGGGATCTCCTGAGGCCTGGGAATTGCTCGAGGCCTGTGTCACAGCTGGACTGAAGAGTAGCAGCAGCTCAAATGTCTTTTGTTGCTTGT
TCCCCAGCTTTAGTCAATTATTATTTTTCCCTTGAAGAATTGCCTCTCGTTGGCATGCAAATTGAGCATAAAAGAGGTGCCCGTAATCCCAGCACTTTGG
GAGGCCGAGGTGGGTGGATCACGAGGTCAGGAGATCCAGACCACCCTGGCCAACATGGTGAAGCCCCGTCTCTACTAAAAATACAAAAATTAGCCAGGCG
TGGTGGCGTGTGCCTGTAGTCCCAGCTACCCAGGAGGCTGAGGCAGGAGAATCGCTTGAACTCAGGAGGTGGAGGTTGCAGTGAGCCGAGATCGTACCAC
TGCGCTCCAGCCTGGGCGACAGAGTGAGACTACGCCTCAAAAAAAAAAAAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.