Detailed information on ENST00000493531

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding ENST00000493531 515 279 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding ENST00000493531 537 276 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding ENST00000493531 605 277 UTR3 Trans

Sequence

>TCONS_00116668 (827 nt)
AGAGTCTCGCTGTGTTCCCCAGGCTGGAATGCAGTGGCACGATCTCGGCTCACTTCAGCCTCCGCCTCCCGGGTTCACATGATTCTCCTGCCTTAGCCTC
CCAAGCAGCTGGGATTACAGGCATGCACCACCACGCCTGGCTAATTTGTGTATTTCTAGTAGAGACAGGGTTTCACTGTATTGGCCAGGCTGGTCTCGAT
TTCCTGACCTCAGGTGATCCACCTGCCTCAGCCTCCCAAAGTGGTGGGATTACAGGTGCTAGCCACTGCACCTGGCCGTTTGTGGATATTTAAAAACACA
GTCCTAAAAAACTGTTGGGACAGAGAAGAATCAGAATGAAAATGAGAAAACCTCCGATCCAACAGTGGCAAACACGACGATAGGAAAGTGCTGCCCACGG
TGCTGCTGGATGAGATCGAGGCGGCCGAGCTGGAGGGCAACGATGACAGGATCGAGGGCGTGCTGTGCGGGGCCGTGAAGCAGCTGAAGGTCACCCGCGC
CAAGCCTGACAGCACCCTCTACCTGAGCCTCATGTACCTGGCCAAGATCAAGCCCAACATCTTCGCCACTGAGGGCGTCATTGAGGCTCTGTGTAGCCTC
CTGCGGCGGGACGCCTCCATCAACTTCAAGGCCAAGGGGAACAGCCTGGTGTCTGTGCTGGCCTGTAACCTCCTCATGGCCGCCTACGAGGAGGACGAGA
ACTGGCCCGAGATCTTTGTCAAGGTGTACATCGAGGACTCCCTGGGGGAGCGGATCTGGGTGGACAGCCCTCACTGTAAGACGTTTGTGGACAACATCCA
GACGGCCTTCAACACCAGAATGCCCCCC

Expression



Full and truncated open reading frames discovered in TCONS_00116668

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.