Detailed information on ENST00000493624

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript ENST00000493624 577 301 noncoding Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding ENST00000493624 604 287 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000493624 604 287 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000493624 604 287 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000493624 604 287 UTR3 Trans
TCONS_00165715 LIM domain kinase 2 novel protein coding ENST00000493624 540 291 UTR3 Trans
TCONS_00165721 LIM domain kinase 2 novel protein coding ENST00000493624 540 291 UTR3 Trans

Sequence

>ENST00000493624 (3250 nt)
GGGGCTGTGGGAGGAAGAAAGGCTAGCGGGCGTTGGCCGTATGTGGGTGTCTTGAGGCAGTTTTTCAGTTCTTTCATTTACCAAAGTGACATGCACCTAC<br />TAGGTGCCAGGTGTTTAGACGTACATACAACCCTCTGCAAAATCTTTCAGTGTAGTCCTCTGTATGAAAAGTTTCCAGCCAAGAATTGCCACTGCACCTG<br />AGATAAGGGGGATCCTGGCCATTAAGGAAACCTTGCCTTCGAAACTGAGCCGTGAGGAACTATACAAAATGGGAAATTGGGACAAATCCCAGTGGCTCAT<br />GACACTAAGAAGTAAAATTACGAACTCACTGAGCTGGAAGTCATTCAACGGGAATTGAATAGGTAAGCTACTATACTGGGAAATGAAGGAGTAGGAAAGA<br />AGGAAAACCTCAAGTTACAAACTATGGGTGGAGATTCAGCTACGAGGATGGGGTGGTGTTTTAAGTATTACCATTTTACAAGTAAATACTCACTAAATGT<br />GTGTATCATCCCACAACTAGTGGAAGGTGGGATTCCAAACCACATTTGTAACTTAGGAAACGTGCCCTTTCCACTACAATACCACAAATAAATTGCTATT<br />GTGAATAAAGAATGGAACCAGTCATCCTAAGCTCCTGGCTGTAACAATAGTGTTATGCTGAGGAAAGGCTGTTTCTTTTTTTTTTGAGACGGAGTTTCAC<br />TCGTCGCCCAGGCTGGAGTGCAGTGACACAATCTCGGCTCAATGCAACCTCTGCCTCCCGGGATCAAGCTATTCCCCTGCCTCAGCCTCCCGAGTAGCCG<br />GGATTACAGGCACCCGCCACCACGCCCGGCCAATTTTTATGTTTTTAGTAGAGACGTAGTTTCACCACGTTGGCCAGGCTGGTCTCAACCTCATGACCTC<br />AGGTGATCCGCCCGCCTCCGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACCGCGCCCAGCCAGGAGGCAAAGCTGTTTCAATGGTGTAGTGGACA<br />AGTTACCAGCCACGCAAGCCCTTTCCTGTAAACCACAGGACTCCTCCTTTGGCAACGGTGACTTGAGTACTTTTGACTTAATTTCCATATGGGAGGAGAA<br />AAACATAAAAACATACATTTATTATTTACAAATGCTGCATCATCTCAGTAAGGAAGAGCATGTATTTGCTTTTGAGTCTCATTTGCCATTGCACATGTAA<br />GTTACTCGAGTTAAAGTCTCAACCGTTTGTTTTCCCCCGCTTTGCTCAGATGCCTACCACTTACCGTGTGTCTGTTCCACTCAGAATACCATCCACTTCT<br />CCATATGCCTAACCCAGACCTGAAATACCCATCTGTCTTCATGGATATGTCCACAGGTTAACATCTTACAGCTTCCTCAAATTCAACTTTAGCTCCTCCC<br />ACAAAACCATCTCCTGATTCCCCAACTTTGTAAATGCACCATTATCCATCCAGCCCCCAAAGCCAGAAACATGTTAGAATTCTCCATTTGAGACTGAAAA<br />GCCCACCTAATTTTCCCTTGTTTATGCTGGGATGCCATTGGGATTTGAAATAATCTGAGCTGGTGGCTCATATCTGTAATCCCAGTACTTTAGGAGAACA<br />AGGCAGGGGGATCACTTGAGGCCAGGAATCGAGACCAGCCTGGGACCCCGAAAAAACATTTTAATTGGCTGGACGTGCCTGGCATGCACCAGATTCTCTG<br />GAGGTTGTGGGCAGGGGATTGTCTGAGCCTAGAAGTTCAAAGGTGCAGTGAGCTATGATCACACCACTGCACTACAGGCTGGGCAACAGAAACCCTGTCT<br />CAAATGAGTAAATTTTAAAATTTCCTGTGAATCAAGTTCTTCAGTGACGTTGTATTACACTCAAGAACAATCTTAAGCCTAAGATCCTCAGTTCAGTACA<br />GGAGACCTCTCATGTGGCATTTTAGTTTTCTGGACTTTCCAGTCAGCCACTTGTGTTCCTAAAATCTTCCTGCCATTTCCTCTTTGAGATGCCGCCCTAT<br />TTCTTCCTCTACACTTTACGGTTTTATGTTACGCAGCCAGTATACCTACATGCCTCTATCCCTGAATACCCCGAGTACTACTGATCACATCTACTTAACT<br />GGCACAATGAACACAGTAGGTACTTTTAGCTTATGTTGGCCTTTTGGAGTGGGTGTCCAAGATCAGCACTTCCTCGCGCTGACTGCGTAATTCCCAAGTT<br />CAATTTCATTAGCATTCTAATATACAACTTCCAACTTCCGGCCTTGAAGTACTGCTCACTTCTGGTGAATACAGCATCAGTGCACTTTGTTTGCCTTAAA<br />ACCACAATCCTGGGAGGCTGAGACAGAATGGCGTGAACCCGGGAGGCGGAGCGTGCAGTGAGCCAAGATTGCGCCACTGCACTCCAGCCTAGACGACAGA<br />GCAAGACTGTCTCAAAAAAAAAAAAAAAAAAACCACCACAATCCTAATAAATGAGCCTGGCAGAGTACTAACACAAGCCCATGTCCACGAAGCACGGGAC<br />TCCAACAATGGCAGCTTTGGCTTGCATACCACCATTGGACTGACCAAACCTTTCTTAGAACTGCCAGTGTGACAGAGGGACCTCTGGGGGAGGGCGTCTT<br />GCTTTCTCTTGGGTCAGTATATCTCACTACCCTCTTTGTAGGTTAGCAGATTTGTAACAGGATGTTACTGGAGGAAGGGGAAGTGGGAAAGCTGGACAGT<br />ATTCCCACTCTTTTCCCTTACTACAAAAACTTTCCTTCTCAGTCCTGTCTCCAGGAGATGGAAGACCAAATAACACAACAGCCAGTGTGCTTTTCCTACC<br />CAATCCTTTCTTTCACCCTCTTATCCTAATACATTTCCAGCATGTTAATTCTTTTGCAGCATAGACAAGAGAACCCATACACGCTGCAAAACTGCAAAAG<br />GGCTTAGGTGGCAAACTCCCAGTTTCTTGTTGACATTTTCAGTGCAATTTAAAGATGTTAATTTAAAAAACTACCTGTGCTGTAGAGATCAGTAACCCTC<br />AGGGGGCAGACAAAAAGACTGTTACTGCATCAGTTAGAAATGTAGTACTACCTGGGCAACATAGTGAGGCCCATCTCCACAAATAACTAAAAAGTTAACT<br />GGTTGTGGCTGCACATGCCTGTGGCCCCAGCTATTTAGGAGGCTGAGGCAGGAGGTTTGCCTGAGCCGAGGAGGTTGAGGTTGAGGTTGCAGTAAGCTGT<br />AATCACGCCACTGCACTCCAGCCCAAGCAACAAAACAAGACCTTGTCTTC

Expression



Full and truncated open reading frames discovered in ENST00000493624

In silico ORF/peptide predictions
>peptide 1 (66 aa)
GAVGGRKASGRWPYVGVLRQFFSSFIYQSDMHLLGARCLDVHTTLCKIFQCSPLYEKFPAKNCHCT

>peptide 2 (64 aa)
MKSFQPRIATAPEIRGILAIKETLPSKLSREELYKMGNWDKSQWLMTLRSKITNSLSWKSFNGN

>peptide 3 (62 aa)
MLAFWSGCPRSALPRADCVIPKFNFISILIYNFQLPALKYCSLLVNTASVHFVCLKTTILGG

>peptide 4 (55 aa)
MGGDSATRMGWCFKYYHFTSKYSLNVCIIPQLVEGGIPNHICNLGNVPFPLQYHK

>peptide 5 (55 aa)
MLLEEGEVGKLDSIPTLFPYYKNFPSQSCLQEMEDQITQQPVCFSYPILSFTLLS

>peptide 6 (54 aa)
MQPLPPGIKLFPCLSLPSSRDYRHPPPRPANFYVFSRDVVSPRWPGWSQPHDLR

>peptide 7 (54 aa)
MLRSQYTYMPLSLNTPSTTDHIYLTGTMNTVGTFSLCWPFGVGVQDQHFLALTA

>peptide 8 (50 aa)
MYLLLSLICHCTCKLLELKSQPFVFPRFAQMPTTYRVSVPLRIPSTSPYA


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT094468 (Evalue: 0)

Best hit to Swiss-Prot:
sp|Q8N2A0|CX062_HUMAN (Evalue: 1.0E-29)