Detailed information on ENST00000493624

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript ENST00000493624 577 301 noncoding Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding ENST00000493624 604 287 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding ENST00000493624 604 287 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding ENST00000493624 604 287 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding ENST00000493624 604 287 UTR3 Trans
TCONS_00165715 LIM domain kinase 2 novel protein coding ENST00000493624 540 291 UTR3 Trans
TCONS_00165721 LIM domain kinase 2 novel protein coding ENST00000493624 540 291 UTR3 Trans

Sequence

>TCONS_00165721 (3249 nt)
GGGGCTGTGGGAGGAAGAAAGGCTAGCGGGCGTTGGCCGTATGTGGGTGTCTTGAGGCAGTTTTTCAGTTCTTTCATTTACCAAAGTGACATGCACCTAC
TAGGTGCCAGGTGTTTAGACGTACATACAACCCTCTGCAAAATCTTTCAGTGTAGTCCTCTGTATGAAAAGTTTCCAGCCAAGAATTGCCACTGCACCTG
AGATAAGGGGGATCCTGGCCATTAAGGAAACCTTGCCTTCGAAACTGAGCCGTGAGGAACTATACAAAATGGGAAATTGGGACAAATCCCAGTGGCTCAT
GACACTAAGAAGTAAAATTACGAACTCACTGAGCTGGAAGTCATTCAACGGGAATTGAATAGGTAAGCTACTATACTGGGAAATGAAGGAGTAGGAAAGA
AGGAAAACCTCAAGTTACAAACTATGGGTGGAGATTCAGCTACGAGGATGGGGTGGTGTTTTAAGTATTACCATTTTACAAGTAAATACTCACTAAATGT
GTGTATCATCCCACAACTAGTGGAAGGTGGGATTCCAAACCACATTTGTAACTTAGGAAACGTGCCCTTTCCACTACAATACCACAAATAAATTGCTATT
GTGAATAAAGAATGGAACCAGTCATCCTAAGCTCCTGGCTGTAACAATAGTGTTATGCTGAGGAAAGGCTGTTTCTTTTTTTTTTGAGACGGAGTTTCAC
TCGTCGCCCAGGCTGGAGTGCAGTGACACAATCTCGGCTCAATGCAACCTCTGCCTCCCGGGATCAAGCTATTCCCCTGCCTCAGCCTCCCGAGTAGCCG
GGATTACAGGCACCCGCCACCACGCCCGGCCAATTTTTATGTTTTTAGTAGAGACGTAGTTTCACCACGTTGGCCAGGCTGGTCTCAACCTCATGACCTC
AGGTGATCCGCCCGCCTCCGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACCGCGCCCAGCCAGGAGGCAAAGCTGTTTCAATGGTGTAGTGGACA
AGTTACCAGCCACGCAAGCCCTTTCCTGTAAACCACAGGACTCCTCCTTTGGCAACGGTGACTTGAGTACTTTTGACTTAATTTCCATATGGGAGGAGAA
AAACATAAAAACATACATTTATTATTTACAAATGCTGCATCATCTCAGTAAGGAAGAGCATGTATTTGCTTTTGAGTCTCATTTGCCATTGCACATGTAA
GTTACTCGAGTTAAAGTCTCAACCGTTTGTTTTCCCCCGCTTTGCTCAGATGCCTACCACTTACCGTGTGTCTGTTCCACTCAGAATACCATCCACTTCT
CCATATGCCTAACCCAGACCTGAAATACCCATCTGTCTTCATGGATATGTCCACAGGTTAACATCTTACAGCTTCCTCAAATTCAACTTTAGCTCCTCCC
ACAAAACCATCTCCTGATTCCCCAACTTTGTAAATGCACCATTATCCATCCAGCCCCCAAAGCCAGAAACATGTTAGAATTCTCCATTTGAGACTGAAAA
GCCCACCTAATTTTCCCTTGTTTATGCTGGGATGCCATTGGGATTTGAAATAATCTGAGCTGGTGGCTCATATCTGTAATCCCAGTACTTTAGGAGAACA
AGGCAGGGGGATCACTTGAGGCCAGGAATCGAGACCAGCCTGGGACCCCGAAAAAACATTTTAATTGGCTGGACGTGCCTGGCATGCACCAGATTCTCTG
GAGGTTGTGGGCAGGGGATTGTCTGAGCCTAGAAGTTCAAAGGTGCAGTGAGCTATGATCACACCACTGCACTACAGGCTGGGCAACAGAAACCCTGTCT
CAAATGAGTAAATTTTAAAATTTCCTGTGAATCAAGTTCTTCAGTGACGTTGTATTACACTCAAGAACAATCTTAAGCCTAAGATCCTCAGTTCAGTACA
GGAGACCTCTCATGTGGCATTTTAGTTTTCTGGACTTTCCAGTCAGCCACTTGTGTTCCTAAAATCTTCCTGCCATTTCCTCTTTGAGATGCCGCCCTAT
TTCTTCCTCTACACTTTACGGTTTTATGTTACGCAGCCAGTATACCTACATGCCTCTATCCCTGAATACCCCGAGTACTACTGATCACATCTACTTAACT
GGCACAATGAACACAGTAGGTACTTTTAGCTTATGTTGGCCTTTTGGAGTGGGTGTCCAAGATCAGCACTTCCTCGCGCTGACTGCGTAATTCCCAAGTT
CAATTTCATTAGCATTCTAATATACAACTTCCAACTTCCGGCCTTGAAGTACTGCTCACTTCTGGTGAATACAGCATCAGTGCACTTTGTTTGCCTTAAA
ACCACAATCCTGGGAGGCTGAGACAGAATGGCGTGAACCCGGGAGGCGGAGCGTGCAGTGAGCCAAGATTGCGCCACTGCACTCCAGCCTAGACGACAGA
GCAAGACTGTCTCAAAAAAAAAAAAAAAAAAACCACCACAATCCTAATAAATGAGCCTGGCAGAGTACTAACACAAGCCCATGTCCACGAAGCACGGGAC
TCCAACAATGGCAGCTTTGGCTTGCATACCACCATTGGACTGACCAAACCTTTCTTAGAACTGCCAGTGTGACAGAGGGACCTCTGGGGGAGGGCGTCTT
GCTTTCTCTTGGGTCAGTATATCTCACTACCCTCTTTGTAGGTTAGCAGATTTGTAACAGGATGTTACTGGAGGAAGGGGAAGTGGGAAAGCTGGACAGT
ATTCCCACTCTTTTCCCTTACTACAAAAACTTTCCTTCTCAGTCCTGTCTCCAGGAGATGGAAGACCAAATAACACAACAGCCAGTGTGCTTTTCCTACC
CAATCCTTTCTTTCACCCTCTTATCCTAATACATTTCCAGCATGTTAATTCTTTTGCAGCATAGACAAGAGAACCCATACACGCTGCAAAACTGCAAAAG
GGCTTAGGTGGCAAACTCCCAGTTTCTTGTTGACATTTTCAGTGCAATTTAAAGATGTTAATTTAAAAAACTACCTGTGCTGTAGAGATCAGTAACCCTC
AGGGGGCAGACAAAAAGACTGTTACTGCATCAGTTAGAAATGTAGTACTACCTGGGCAACATAGTGAGGCCCATCTCCACAAATAACTAAAAAGTTAACT
GGTTGTGGCTGCACATGCCTGTGGCCCCAGCTATTTAGGAGGCTGAGGCAGGAGGTTTGCCTGAGCCGAGGAGGTTGAGGTTGAGGTTGCAGTAAGCTGT
AATCACGCCACTGCACTCCAGCCCAAGCAACAAAACAAGACCTTGTCTTC

Expression



Full and truncated open reading frames discovered in TCONS_00165721

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.